Serratia marcescens subsp. marcescens Db11: SMDB11_0448
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Entry
SMDB11_0448 CDS
T03985
Symbol
holA
Name
(GenBank) DNA polymerase III, delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
smac
Serratia marcescens subsp. marcescens Db11
Pathway
smac03030
DNA replication
smac03430
Mismatch repair
smac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SMDB11_0448 (holA)
03430 Mismatch repair
SMDB11_0448 (holA)
03440 Homologous recombination
SMDB11_0448 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smac03032
]
SMDB11_0448 (holA)
03400 DNA repair and recombination proteins [BR:
smac03400
]
SMDB11_0448 (holA)
Enzymes [BR:
smac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SMDB11_0448 (holA)
DNA replication proteins [BR:
smac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SMDB11_0448 (holA)
DNA repair and recombination proteins [BR:
smac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SMDB11_0448 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delt_C
DNA_pol3_delta
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
CDG11035
LinkDB
All DBs
Position
complement(474909..475943)
Genome browser
AA seq
344 aa
AA seq
DB search
MIRIYPEQLAAQLREGLRACYLLSGNEPLLLQESQDLLRQAAQQQQFSEHYSISLDAHTD
WDAIFGICQAMSLFASRQTLLLIFPENGPTAPIGEQLTKLATLLHEDILLILRGPRLTKA
QENSAWFKALSPHGALVSCQTPEQAQLPRWVATRAKAMKLELDDAANQLLCYCYEGNLLA
LSQALERLSLLHPDGKLTLPRVEQAVNDAAHFTPFHWLDALLAGKSKRAWHILQQLQQED
VEPVILLRTLQRELLLLLTLQRRKASAPLRTLFDQHKVWQNRRPLVTQALQRLSGAQLQQ
AVQLLTQIELTLKQDYGQSVWPELETLSMLLCGKPLATSFSDAH
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcatttatccggaacaacttgccgcgcagctccgagaggggctgcgcgcttgt
tatttattgagcggcaatgaaccgctactgctgcaggaaagccaggatctgctccggcag
gctgcgcaacagcagcagttcagcgagcactacagcatttccctcgacgcccataccgac
tgggacgccatcttcggcatctgccaggcgatgagcctgttcgccagccgccagacgctg
ctgctgatcttcccggaaaacggcccgacggcgccgatcggcgaacagctgaccaagctt
gccacgctgctgcacgaggatattctgctgatcctgcgcggcccgcgcctcaccaaagcg
caggaaaacagcgcctggttcaaggcgctcagcccacacggcgccctcgtcagttgccag
acgccggaacaggcacagctgccgcgctgggtcgccacgcgcgccaaggcgatgaagctg
gaattggacgacgccgccaatcagctgttgtgctactgctacgaaggcaacctgctggcg
ctgtcgcaggcgctggagcggctgtcgctgctgcacccggacggcaaactcacgctgccg
cgcgtcgaacaggcggtgaacgacgccgcccacttcacgccgttccactggctggatgcc
ctgctggccggcaaaagcaagcgcgcctggcatatcttgcagcagctgcagcaagaggac
gtggagccggtgatcctgctgcgcaccttacagcgcgaactgctgctgttgctgacgctg
cagcgccgcaaggcgtccgcgccgctgcgcacgctgttcgaccagcacaaggtctggcag
aatcgccgcccgctggtgacccaggcgctgcaacgcctgtccggcgcccagctgcagcaa
gcggtacagctgctgacgcaaatcgagctgaccctcaagcaggactatggccagtcggtc
tggccggaactggaaaccctgtcgatgctgctgtgcggcaaacccctggccacgagtttt
agcgatgcccactaa
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