Serratia marcescens subsp. marcescens Db11: SMDB11_0577
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Entry
SMDB11_0577 CDS
T03985
Symbol
rhlE
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smac
Serratia marcescens subsp. marcescens Db11
Pathway
smac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMDB11_0577 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smac03019
]
SMDB11_0577 (rhlE)
Enzymes [BR:
smac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SMDB11_0577 (rhlE)
Messenger RNA biogenesis [BR:
smac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SMDB11_0577 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
AAA_22
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
CDG11159
UniProt:
A0ABC9IEP1
LinkDB
All DBs
Position
610816..612195
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AA seq
459 aa
AA seq
DB search
MSFETLGLSAEIVRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSKHDHPVKGRRPVRALILTPTRELAAQIGENVEAYSKHLRLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKALANKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMI
GEGDWKQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGRIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALPGYEPDPTIKAEPIINGRQGGGRGAPRGNGGGQRSGNGGGQRSGNAN
GGQRENRGNGNGNARPQGDGQRRSGAPASRRPRSRKPAE
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaaaccctcggcttaagtgctgaaattgtgcgcgctgttgaagaacagggc
tatcgcgaaccgacgccaatccagcgtcaggctatccctgtcgtgctggaaggtcgtgac
ctgatggccagcgctcagaccggcaccggtaaaaccgccggttttaccctgccgctgttg
cagctgctgagcaagcatgaccatccggtcaaaggccgtcgcccggtgcgcgcgctgatc
ctgacgccaacccgtgagctggcggcgcagatcggcgaaaacgtcgaggcctacagcaaa
cacctgcgcctgcgttcgctggtggtgtttggcggcgtgagcatcaacccgcagatgatg
aagctgcgcggcggcgtcgatatcctggtggcgacgccgggccgtctgctggatctggaa
catcagaacgcggttgacctgtccaaaatcgaaattctggtgctggacgaagcggaccgc
atgctggacatgggctttatccacgacatccgtcgcgtgctggccaagctgccggccaag
cgccagaacctgctgttctccgcaaccttctccgacgacatcaaggcgctggccaacaaa
ctgctgcataacccggcctcggtggaagtggcgcgccgcaataccgcgtccgagcagatc
gagcagagcgtgcacttcgtcgacaagaagcgtaagcgggaactgctgtcgcagatgatc
ggcgaaggcgactggaaacaggtgctggtctttacccgcaccaagcatggcgccaaccac
ctggcggaacagctgaacaaagacggcatcaccgctgcggcgatccacggcaacaagagc
cagggtgcccgtacccgtgcgctggccgattttaaagacggccgcatccgcgtgctggtg
gcgaccgacattgcggcgcgcggtctggatatcgaccagttgccgcacgtggtgaactac
gagctgcctaacgtgccggaagactacgtgcaccgcatcggccgcaccggccgcgcggag
cgtaccggcgaagccatctcgctggtgtgcgtggatgaacacaagctgctgcgcgacatc
gagcgtctgctgaagcgtgaaattccgcgcattgcgctgccgggctacgagccggatccg
accatcaaggccgagccgatcatcaacggccgccagggcggcggacgcggcgcgccgcgc
ggcaacggcggtggccagcgttccggtaacggcggcggtcagcgcagcggtaacgcgaac
ggcggccagcgtgaaaaccgtggcaacggtaacggtaacgctcgcccgcagggtgacggt
caacgccgttccggcgcgccggcctcgcgtcgtccacgtagtcgcaaaccggccgaataa
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