Serratia marcescens subsp. marcescens Db11: SMDB11_0677
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Entry
SMDB11_0677 CDS
T03985
Name
(GenBank) putative amidolyase
KO
K01941
urea carboxylase [EC:
6.3.4.6
]
Organism
smac
Serratia marcescens subsp. marcescens Db11
Pathway
smac00220
Arginine biosynthesis
smac00791
Atrazine degradation
smac01100
Metabolic pathways
smac01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09100 Metabolism
09105 Amino acid metabolism
00220 Arginine biosynthesis
SMDB11_0677
09111 Xenobiotics biodegradation and metabolism
00791 Atrazine degradation
SMDB11_0677
Enzymes [BR:
smac01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.4 Other carbon-nitrogen ligases
6.3.4.6 urea carboxylase
SMDB11_0677
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Gene cluster
GFIT
Motif
Pfam:
CT_A_B
CPSase_L_D2
Biotin_carb_N
CT_C_D
Biotin_carb_C
Biotin_lipoyl
Dala_Dala_lig_C
Biotin_lipoyl_2
ATP-grasp_5
ATP-grasp
RimK
NQRA_N
RnfC_N
PTS_EIIA_1
Motif
Other DBs
NCBI-ProteinID:
CDG11260
LinkDB
All DBs
Position
713156..716782
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AA seq
1208 aa
AA seq
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MNMFTTVLIANRGEIACRAIRTLKRLGVTSVAVYSDADRNAPHVAEADRAVALGGDKAAD
SYLRIDKILAAAAATGAQAIYPGYGFLSESAEFADACEAAGIAFIGPTAAQMREFGLKHR
ARELAALAGVPMTPGTGLLESVEQAVAAAARIGYPVMLKSTAGGGGIGLTRCDDEAALRD
AYDSVKRLGEQFFRDAGAFIERFVDRARHVEVQIFGDGQGRVAALGERDCSLQRRNQKVV
EETPAPHLPAATRQALHRAAVALGESVNYRSAGTVEFIYDAARDEFYFLEVNTRLQVEHP
VTEMVTGLDLIACMLQVAAGDALDWAALQRAPQGAAIEVRLYAEDPLKNFQPSPGVLTEV
HFPDDVRLDGWVATGSEVSAFYDPMIAKLIVHGADRAQALEKLRVALAATRLHGIATNLD
YLRQVIATPQFQRGDVWTRLLDDVRFQPHCLEVLQPGTYSSVQDYPGRLGYWDIGVPPSG
PMDDFAFRLANRIVGNHPAAAGLEFTLQGPTLRFHCDATLALTGASCPADLDGEAVAYWR
PIAVRAGQVLTLGRATQGCRTYLAVRNGFDVPVYLGSRSTFALGQFGGHAGRTLRVADML
AIAQPALAASTTPAPIAAPQAMDDSLIPHYGDQWHIGVLYGPHGAPDFFTAESIEAFFAT
DWQVHYNSNRLGVRLAGPKPEWAREDGGEAGLHPSNVHDCEYAIGAINFTGDFPVILTRD
GPSLGGFVCPVTIAKAELWKVGQVKPGDRIRFHPIGFRQAQSLEQAQLGSIEALAAVKAI
TLPPPDLAPAETVSAAVLAALPAAEGRPAVAYRQAGDGYILMEYGDNVLDLALRLRIHLL
MQSLREEVIPGVAELAPGVRSLQIRYDSRQISQADLLQRLLARERALGDVSHLKVPTRTV
WLPMAFEDSATLGAVDRYQQTVRASAPWLPNNVDFIQRINGLSRREQVRDILFDASYLIL
GLGDVYLGAPCAVPLDPRHRLLSSKYNPARTHTAEGTVGIGGMYMCIYGMDSPGGYQLVG
RTLPIWNKFLKNPQFTAGEPWLLRFFDQVRFYPVSEQELDEQREAFREGRMQVRIEESEF
DFAAYTRFLADNAGAIADFQHRQQQAFSAEVARWRSDDDEAEAQLLPPEEEDAIDGDLVS
ADLNGSVWKILVEPGQAVAAGQPLIVVEAMKMELAVTAPRAGIVKRISCRQGRPVGPGDA
LLWLEKAV
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgtttactaccgtactgatcgctaaccgcggcgaaatcgcctgccgcgccatt
cgcaccctgaaacgcctgggcgtaaccagcgtggcggtctattccgacgccgaccgcaat
gcgccgcacgtcgccgaggccgacagggcggtggcgcttggcggcgacaaggccgccgac
agctacctgcgcatcgacaagatcctcgcggcggccgcggccaccggcgcgcaggcgatc
taccccggctacggctttttgtccgagagcgccgagtttgccgacgcctgcgaagcggcg
ggcatcgcctttatcggcccgacggcggcgcagatgcgcgagttcggcctcaagcaccgg
gcgcgcgagctggcggcgttggccggggtgccgatgacgccgggcaccggcttgctggag
agcgttgagcaggcggttgccgccgccgcacgcatcggctacccggtgatgctgaaaagc
accgccggcggcggcggcatcggtctgacgcgctgtgacgacgaggcggcgctgcgcgac
gcgtacgacagcgtcaaacggctgggagagcagttcttccgcgacgccggcgcctttatc
gaacgcttcgtcgatcgggcgcgccacgtcgaggtgcagattttcggcgacggccagggg
cgggtggcggcgctcggcgagcgcgactgttcgctgcagcggcgcaaccaaaaggtggtg
gaggaaaccccggcgccgcatctgccggcggcgacccgccaggcgctgcaccgggcggcg
gtggcgctgggcgagtcggtgaattaccgcagcgccggcaccgtagaatttatctatgac
gccgcgcgcgacgagttttatttcctggaagtgaacacccgcttacaggtcgagcacccg
gtcaccgaaatggtcaccggcctggatctgatcgcatgcatgctgcaggtggcggcgggc
gacgcgctggattgggcggcgttgcagcgcgcgccgcagggcgcggcgatcgaggtgcgc
ctctacgccgaagatccgctgaaaaacttccagcccagccccggcgtgctgaccgaggtg
catttccctgacgacgtgcgcctcgacgggtgggtggcgactggcagcgaagtgtcggcg
ttttacgacccgatgatcgccaagctgatcgtgcacggcgccgatcgggcgcaggcgctg
gaaaaattgcgcgtggcgttggcggcgacccgtttgcacggcatcgccaccaacctcgac
tatctgcggcaggtgatcgccacgccgcaatttcagcgcggcgacgtctggacgcgcctg
ctggacgatgtgcgtttccagccgcactgcctcgaagtgctgcaacccggtacctacagc
agcgtgcaggattatcccggccgcctcggctattgggacatcggcgtgccgccgtccggc
ccgatggacgacttcgcgtttcggctggccaaccgcatcgtcggcaaccacccggcggcc
gccgggttggagtttaccctgcaggggccgacgctgcgctttcactgcgacgccaccctc
gcgctgacgggcgcgagctgcccggccgatctggacggtgaagcggttgcgtattggcgg
ccgatcgcggtgcgggccgggcaggtattgacgctggggcgcgccacgcaaggctgccgc
acctatctggcggtacgtaacggctttgacgtgccggtgtatctcggcagccgctccacc
ttcgcgctgggccagttcggcggccacgccgggcgcaccttgcgcgtggcggacatgttg
gcgatcgcccaaccggcgctggcggccagcactacgccggcgccgatcgccgcgccgcag
gcgatggacgacagcctgatcccgcactacggcgaccagtggcacatcggcgtgctgtac
gggccgcacggcgcgccggactttttcaccgctgaatcgatagaggccttttttgccacc
gactggcaggtgcattacaactccaaccgcctcggggtgcgcctggcggggccgaagccc
gagtgggcgcgggaggacggcggcgaggccggtttgcatccttccaacgtgcacgattgc
gagtacgccatcggcgccatcaacttcaccggcgacttcccggtgatcctaacccgcgac
gggcccagccttggcggcttcgtctgcccggtgaccatcgccaaggccgagctatggaaa
gtggggcaggtgaagccgggcgaccgcatccgtttccatccgatcggcttccggcaggcg
cagtcgctggagcaggcgcagctcggcagcatcgaagcgctggcggcggtgaaggccatc
accctgccgccgccggatctggccccggcggagaccgtttccgccgcggtgctggcggcg
ctgccggcggcggaagggcgcccggcggtggcgtatcgccaggcgggggacggctacatc
ctgatggagtacggcgacaacgtgctcgatctggcgctgcggctgcgcattcatctgctg
atgcagtcgctgcgggaggaggtgataccgggcgtggcggagctggcgccgggcgtgcgt
tcactgcagatccgctacgacagccggcagattagccaggccgacttgctgcagcgcctg
ctggcgcgtgaacgggcgctgggggacgtcagccacctgaaggtgccgacgcgcaccgtg
tggctgccgatggcgttcgaagattcggccacgctgggggcggtggatcgctatcaacag
acggtgcgcgcctcggcgccctggctgccgaacaacgtcgatttcattcagcgcatcaat
ggcctgagccgacgcgagcaggtgcgcgacattctgttcgacgccagctacctgatcctc
gggctgggcgacgtctacctcggcgcgccctgcgcggtgccgctcgatccgcgccatcgc
ctgctgagctccaaatataacccggcgcgcacccacaccgccgaagggacggtcggcatc
ggcggcatgtacatgtgcatctacggcatggactcgccgggcggttaccagttggtcggg
cgcacgctgccgatctggaacaaattcctcaaaaacccgcagttcaccgccggtgagccc
tggctgctgcgcttcttcgatcaggtgcgcttctacccggtcagcgagcaagaactggac
gagcagcgcgaagcgttccgtgaagggcgcatgcaggtgcgcatcgaagagagcgaattc
gacttcgccgcctacacccgtttcctggccgacaacgccggggcgatcgccgacttccag
catcgccagcagcaggcgttcagcgccgaagtggcgcgctggcgcagcgatgacgacgag
gccgaggcgcagctgttgccgccggaggaagaagacgccatcgacggcgatctggtcagc
gccgatctgaacggcagcgtgtggaagatcctggtggaaccggggcaggcggtggcggcc
gggcagccgctgatcgtggtcgaggcgatgaaaatggagctggcggtcaccgcaccgcgc
gccgggatcgttaaacgcatcagctgccggcaggggcggccggtcgggccgggcgacgcc
ctgctgtggctggaaaaggcggtctga
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