Serratia marcescens subsp. marcescens Db11: SMDB11_1156
Help
Entry
SMDB11_1156 CDS
T03985
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
smac
Serratia marcescens subsp. marcescens Db11
Pathway
smac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMDB11_1156 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smac03019
]
SMDB11_1156 (rne)
03009 Ribosome biogenesis [BR:
smac03009
]
SMDB11_1156 (rne)
Enzymes [BR:
smac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SMDB11_1156 (rne)
Messenger RNA biogenesis [BR:
smac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SMDB11_1156 (rne)
Ribosome biogenesis [BR:
smac03009
]
Prokaryotic type
rRNA processing factors
SMDB11_1156 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
CDG11732
LinkDB
All DBs
Position
complement(1220896..1224276)
Genome browser
AA seq
1126 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAVIVPNDEMQ
TPHYSVLRVRKGEETSTLSYLLPKLHEEDMERPLEDAPMERKRPEQPALASFSLSADVPP
PAEEPVAVAKPVAAAAKAKAAAPAAAKPGFLGRLFGGLKNLFAGEEQPAVEEAKPAETPK
AEGNGENRRQDRRGQRRQGTGRKERGERSDRGDRPERGERKERGEGRDNRERDNREPREN
REGRESRESRDEQRRNRRNQQQNAPVAEETASEEGAKAPREDQQQRREQRAERQRRRQEE
KRQAQQEVKALESVDAVESTDEEQEERQQQNMQRRQRRPLSQKVRILSAEEELQRAAEEL
LAPKAPVAKAEDAQPTADDSVKLLPETVAAQQEDDAQGESRGNGEGMPRRSRRSPRHLRV
SGQRRRRYRDERYPLQSPMPLAGAFASPEMASGKVWVSYPVAQVEEAEVQTEAVEQAPVV
AAAVEQHSVTVEDTQTAASVNGPAPEAAVETASVTVTEEAAVVAPVVATPAEEIPAPVET
APATVAVEQPKVEETAPAVEAEPVAETVAVEPVVEPVPTEDEPVVEVAPVVEATPAEETP
VVEAAPTAASVEVVPVEKAPAPIAAEPAPAVAQQPAPVKAVQDALYKHIATAPMTKAPAP
AYVPEERKHSNWQRPSFNFEGKGSAGGHSAVSQATAPATKPQPVNE
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgccctcgtagat
ggacagcggctgtatgatttggatatcgaaagtccgggtcatgagcagaaaaaagcgaat
atttacaaaggcaaaatcacccgcattgaaccaagtcttgaagcagcgttcgtggactac
ggcgcagaacgacatggtttcctccctcttaaagaaatcgcccgcgaatacttccctagc
aattactcttcccatggccgcccgaacatcaaagatgtgctgcgcgaaggccaggaagtc
atcgttcaggtagacaaagaagaacgtggcaacaaaggcgccgccttgaccaccttcatc
agcctggcgggcagctatctggtgctgatgccgaacaacccgcgcgccggcggtatttct
cgccgcatcgagggtgacgatcgtaccgagctgaaagaagcgctctcttcgctgcaactg
ccagacggcatgggcctgatcgttcgcaccgcgggcgtaggcaaatccgccgacgcgctg
cagtgggatctctccttccgtctgaagcactgggaagcgattaaaaaagccgccgaaggc
cgccctgcaccgttcctgatccaccaggaaagcaacgttatcgtgcgtgccttccgcgat
tatctgcgcccggacatcggcgaaatcctgatcgacaacccgaaaattctcgatctggcc
aaagagcacatcgctgcgctgggccgcccggatttcagcagcaaaatcaaactgtacagc
ggtgaaattcctctgttcagccactatcagatcgaatcgcagatcgaatccgccttccag
cgcgaagtgcgcctgccgtccggcggctcgatcgtcatcgacagcaccgaagcgctgacc
gccatcgacatcaactccgcacgcgcaacccgcggcggcgacatcgaagagacggcgttc
aacaccaacctggaagcggcggacgagatcgctcgccagctgcgcctgcgcgacctcggc
ggcctgatcgtcatcgacttcatcgacatgacgccggtacgccaccagcgcgaagtggaa
aaccgcttgcgcgacgccgtgcgtcaagaccgcgcgcgcatccaaatcggccgcatctcc
cgcttcggcctgctggaaatgtcacgccagcgcctcagcccgtcgctgggtgagtccagc
caccacgtgtgcccacgctgtaacggcaccggtaccatccgcgacaacgaatcgctggcg
ctgtccatcctgcgcctgatcgaagaagaagcgctgaaggaaaacaccaaagaagttcac
gctatcgtgccggttcaggtcgcttcgtacctgctgaacgaaaagcgcgaatccgtcagc
gcgatcgaaaaacgtcagggtggcgtgaaagccgtcatcgtgccgaacgatgaaatgcaa
accccgcactactcggtgctgcgcgtgcgcaagggcgaggaaacctctaccctcagctac
ctgctgccgaaactgcacgaagaagacatggagcgtccgctggaagatgcgccgatggaa
cgcaagcgtccggagcaaccggccctggcttccttctccctgtccgccgatgtgccgccg
ccggctgaagaacccgtcgccgttgccaaacctgtcgctgcagccgccaaggctaaagcc
gcagcgccggccgccgctaaaccgggcttcctgggccgcctgttcggtgggctgaagaac
ttgttcgccggtgaagaacaacctgccgtcgaagaagccaaaccggccgaaacgccgaag
gcggaaggcaacggtgagaaccgtcgtcaggatcgtcgcggtcagcgccgtcaaggcacc
ggccgtaaagagcgcggtgagcgtagcgaccgtggcgatcgcccggaacgcggcgagcgt
aaagagcgcggtgaaggtcgtgacaatcgcgagcgcgataaccgtgaaccgcgtgagaac
cgtgaaggccgtgaatcgcgtgaatcccgcgatgaacagcgccgtaaccgccgcaaccag
cagcagaacgcgccggtagcggaggaaaccgcttcggaagaaggtgctaaagcgccgcgc
gaagatcagcagcaacgccgtgagcagcgtgctgaacgccagcgtcgtcgtcaggaagag
aaacgtcaggctcagcaggaagtgaaagcgctggaaagcgttgacgccgtcgagagtacc
gacgaagagcaggaagagcgccagcagcagaacatgcagcgccgtcagcgccgccctctg
tcgcagaaagtgcgtatcctgtctgcggaagaagagctgcagcgtgcagcggaagagctg
ttggcgccgaaagcgccggtagcgaaagccgaagacgcgcagccgaccgccgacgatagc
gtcaagctgttgccggaaaccgttgccgcacagcaggaagacgatgcccagggcgaaagc
cgcggcaacggcgaaggcatgccgcgtcgttcccgtcgttcaccgcgtcacctgcgcgtc
agcggccagcgtcgccgtcgttaccgcgatgagcgttacccgctgcaatccccaatgccg
ttggcgggcgcgttcgcttcgccggaaatggcatcaggcaaagtatgggtaagctacccg
gtcgctcaggttgaagaggccgaagtgcaaaccgaagccgtagagcaggcgccggttgtc
gccgcagcggttgaacagcacagcgttaccgtggaagacactcagaccgcggccagcgtc
aacggaccggcacccgaagccgccgttgaaactgctagcgttaccgtaacggaagaagct
gcagtcgtagcaccggttgtagccactccggccgaggaaatcccggcgccggtggaaacc
gccccggcaactgttgcagttgaacagccgaaagtggaagagactgcccctgcagtggaa
gccgagccggtagctgaaaccgtagctgtagagcccgtggttgaacctgtgccaacggaa
gacgagcctgtggtcgaagttgcaccggtggtagaagccacgccagcggaagaaacgcca
gtggtagaagccgcacctacggcagcctccgtggaagttgttccggtcgaaaaagcccca
gcgccaatcgccgcagaacctgcacctgcagttgcgcagcagccggcaccggtgaaagcc
gtgcaggacgcgctgtacaaacacatcgccactgcgccgatgactaaagcgcctgcgcca
gcctacgtgccggaagaacgcaagcacagcaactggcagcgcccttccttcaactttgaa
ggcaaaggttcagccggtggtcactcggcagtgagccaggccaccgcgcctgccacaaag
ccgcagccggttaacgaataa
DBGET
integrated database retrieval system
