Serratia marcescens subsp. marcescens Db11: SMDB11_1892
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Entry
SMDB11_1892 CDS
T03985
Symbol
rnb
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
smac
Serratia marcescens subsp. marcescens Db11
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smac03016
]
SMDB11_1892 (rnb)
Enzymes [BR:
smac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SMDB11_1892 (rnb)
Transfer RNA biogenesis [BR:
smac03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SMDB11_1892 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
CDG12468
UniProt:
A0ABC9II50
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All DBs
Position
2004774..2006708
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRI
IATLHTEKEREIAEPETLVEPFLSRFVGRVQKRDDRLSIVPDHPLLKDAIPCRPVRELTH
NFQAGDWAVAEMRRHPLKGDRGFNADLTHFITEGEDHFAPWWVTLARHNLEKEAPEMQAL
SEPDAALVREDLTALEFVTIDSASTEDMDDALYVTDNGDGSLQLTIAIADPTAYVEQGSK
LDDIARVRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRQVLACRVTIAADGALGDDIQF
FAAEIESKAKLVYDEVSDWLDGIAGWQPPSDAIAQQITLLKRVCDARNAWRHQHALVFKD
RPDYRFVLGEKGDVLEIVTEQRRSANRIVEECMIAANVCAAIVLRDRLGFGVYNVHTGFD
PALVEQAVTVLQANGVEAEAEKLLTLDGFCELRRHLDAQPTQFLDSRIRRFQTFAEISTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIINQQPAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARFLQDKAGTDTRFNAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHAVRDE
MQCSQETGTVQIKGEVVYRQSDTLQVTIAEVRMETRSVIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcactctcagacccca
cgcgttgaaggcgtcgtgaaagggaccgagaaaggctttggctttcttgaagtagacggt
caaaaaagctacttcattccaccgccgtacatgaagaaagtcatgcacggggatcgcatt
atcgccaccctgcacaccgagaaagagcgcgaaatcgccgagccggaaaccctggtcgag
ccgttcctgtcgcgctttgtcggccgcgtgcaaaagcgcgacgatcgcctgtccatcgtg
cccgatcatccgttgctgaaagatgcgattccgtgccgcccggtgcgtgaactgacccac
aacttccaggccggcgactgggcggtggcggaaatgcgccgccatccgctgaaaggcgat
cgcggcttcaacgccgacctgacccactttatcaccgaaggcgaagaccatttcgccccg
tggtgggtgacgctggcgcgtcacaacctggaaaaagaggcgccggagatgcaggccctc
agcgagccggacgctgcgctggtgcgtgaagatctgaccgcgctcgaattcgtcaccatc
gacagcgccagcaccgaggacatggacgatgcgctgtacgtgaccgacaacggtgacggt
tcgctgcagttgaccatcgccatcgccgatccgactgcctacgtcgaacaaggcagcaag
ctggacgatatcgcccgcgtgcgcgccttcaccaactacctgccgggcttcaacatcccg
atgctgccgcgcgatctgtcggacaacctgtgctcgctgcgccctaacgagcgccgccag
gtgctggcttgccgcgtgaccatcgccgccgacggcgcgctaggcgacgatattcagttc
ttcgccgccgagatcgaatccaaagccaaactggtgtacgacgaagtctccgactggctg
gacggcattgccggctggcaaccgccgagcgacgccatcgcgcaacaaatcaccctgctg
aagcgcgtttgcgatgcgcgcaatgcctggcgccaccagcatgcgctggtgttcaaagat
cgtccggactaccgcttcgtgctgggtgaaaaaggcgacgtgctggagatcgttaccgag
cagcgccgcagcgccaaccgcatcgttgaagagtgcatgatcgccgccaacgtctgcgcc
gccatcgtgctgcgcgatcgcctgggcttcggcgtgtacaacgtgcacaccggtttcgat
cctgcgctggttgaacaagcggtcaccgtgctgcaggccaacggcgtggaagccgaagcc
gagaagctgctgaccctcgacggtttctgcgaactgcgccgccacctggatgcgcagccg
acccaattcctcgacagccgcatccgtcgcttccagaccttcgccgagatcagcactacg
ccggggccacacttcggtctgggtctggaggcttacgccacctggacatcgccgatccgt
aaatacggcgatatggtcaaccatcgtctgctgaaggcgatcatcaaccagcaaccggcg
gaaaagccacaggatgacgtcacggtgcagctggcggagcgccgccgcctgaaccgcatg
gcggagcgcgacgtcggcgactggctgtacgcccgcttcctgcaggacaaggccggtacc
gatacccgcttcaacgccgagatcatcgacgtgacccgtggcggcttgcgtgtacgcctg
ctggacaacggcgcggttgccttcatcccggcaccgttcattcacgcggtgcgtgacgag
atgcagtgcagccaggaaaccggcaccgtgcagattaaaggcgaagtggtttaccgccag
agcgataccttgcaggtcaccatcgccgaagtgcgcatggaaacccgcagcgtgatcgcc
cgcccggcggcctga
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