Serratia marcescens subsp. marcescens Db11: SMDB11_3067
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Entry
SMDB11_3067 CDS
T03985
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
smac
Serratia marcescens subsp. marcescens Db11
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
smac03009
]
SMDB11_3067 (srmB)
Enzymes [BR:
smac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SMDB11_3067 (srmB)
Ribosome biogenesis [BR:
smac03009
]
Prokaryotic type
rRNA helicases
SMDB11_3067 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
CDG13631
LinkDB
All DBs
Position
3241812..3243134
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AA seq
440 aa
AA seq
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MTATTFSELELDDRLIDALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLL
PVLQHLLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW
RNQTLLFSATLEGEAIREFAERILKEPVEVEADPSRRERKKILQWYYRADDVQHKTALLI
HLLQQPDVQKSVIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVN
VLVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHLLL
GKVGRYLNEPLKARVIDELRPKTKVPNEKSNGKPSKKVLAKRAEDKAKNKEKAKVKVRHR
DAKNVGKRRQAKAKPAGDAE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaaccactttttccgaactcgaactcgatgaccgcctgatcgacgcgctgcgc
gacaaaggctacgatcgccccaccgccattcaggccgcagcgatcccgccggcgatggac
gggcgcgacgtcttaggttcggctccgaccggcaccggcaaaaccgccgccttcctgctg
cccgttttgcagcacctgctggactttccacgcaaaaaatccggcccgccgcgcgtgctg
atcctgacgccaacgcgtgaactggcgatgcaggtcgccgaccaggcacgtgaattggct
gctcatacctcgctggatatcgccaccatcaccggcggcgtcgcttacatgaaccacgcg
gaagtgttcagcgaaaaccaggacgtggtggtcgccaccaccggccgcttgctgcaatac
attaaagaagagaacttcgactgccgcgcggtggaaaccctgatcctcgacgaagccgac
cgcatgctcgacatgggcttcgcgcaggacatcgaaaccatctccgccgaaacccgctgg
cgcaaccaaacgctgctgttctccgccacgctggaaggcgaagcgatccgcgaattcgcc
gagcgcatcctgaaagagccggtggaagtggaggccgatccgtcgcgccgcgaacgcaaa
aagatcctgcagtggtactaccgcgccgatgacgtgcagcacaaaaccgcgctgctaatc
cacctgctgcagcagccagacgtgcagaaatcggtgatcttcgtgcgcaagcgcgagcgc
gtgcatgagctggccacctggctgcgcgaagcgggcatcaacacctgctatctcgaaggc
gaaatggtgcaggccaaacgcaacgaggcggtcaaacgcatgatggatggccgggttaac
gtgctggtcgccaccgacgttgccgcacgtggcctggatatcctcgatatcacccacgtg
ttcaacttcgacatgccgcgcacggcggatacctacctgcaccgcatcgggcgtaccggc
cgcgccgggcgcaaaggcaccgccatttcgctggtggaagcgcacgaccatctgctgctg
ggcaaagtgggccgttacctgaacgagccgctgaaagcgcgcgtgatcgacgaactgcgg
ccgaaaaccaaggtgccgaacgagaagagcaacggtaaaccgtcgaagaaagtgctggcc
aagcgcgcggaagacaaggcgaagaacaaagaaaaggccaaggtgaaagtgcgccatcgc
gacgccaaaaacgtcggcaaacgccgtcaggcgaaggccaaaccggccggcgacgcggaa
taa
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