Serratia marcescens subsp. marcescens Db11: SMDB11_3163
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Entry
SMDB11_3163 CDS
T03985
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
smac
Serratia marcescens subsp. marcescens Db11
Pathway
smac03030
DNA replication
smac03430
Mismatch repair
smac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SMDB11_3163 (dnaE)
03430 Mismatch repair
SMDB11_3163 (dnaE)
03440 Homologous recombination
SMDB11_3163 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smac03032
]
SMDB11_3163 (dnaE)
03400 DNA repair and recombination proteins [BR:
smac03400
]
SMDB11_3163 (dnaE)
Enzymes [BR:
smac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SMDB11_3163 (dnaE)
DNA replication proteins [BR:
smac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SMDB11_3163 (dnaE)
DNA repair and recombination proteins [BR:
smac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SMDB11_3163 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CDG13728
UniProt:
A0ABC9ILQ1
LinkDB
All DBs
Position
complement(3341600..3345088)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMIDGLAKTAPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFHVQSDELGDELAQLTVLASNNEGYQNLTLLISRAYQRGYGAAGPTIDRDW
LIEHREGLILLSGARQGDVGKFLLRGNQAQVDQCLDFYQQYFPDCYYLELIRTGRPDEEN
YLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDFLVLKSKEGL
EERLEFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGHHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKTGLEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDRLGPHRAAL
MNSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANIAPWPEQVVLDGERETLG
LYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVVAARVMVTKRGNRIGICT
LDDRSGRLEVMLFTEALEKYQHLLEKDRILIASGQVSFDDFSGGLKMMAREVMDISEARE
KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARAKLRFGATWRVTP
TDRLLIDLRTLVGNEQVDLEFD
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttattcacctgcgcgtccacagtgactactccatgattgatgga
ttggccaagacggcgccgctggtgaaaagagccgccgcgttagccatgcctgctctggca
atcactgatttcaccaacctgtgcgggctggtgaagttctacggcagcgcgcacggcgcc
gggatcaaaccgatcatcggcgcggatttccatgtgcaaagcgatgagctgggcgacgaa
ctggctcagctgacggtgctggccagcaacaacgaaggctaccagaacctgacgctgctg
atttcccgcgcctatcagcgtggctacggcgccgccggcccgaccattgatcgcgactgg
ctgattgaacatcgcgaagggctgatcctgctttccggcgcgcgtcagggcgacgtcggc
aagttcctgctgcgcggtaaccaggcgcaggtggatcaatgcctggacttctaccaacag
tatttcccggactgttactacctggaactgatccgcaccggccgcccggacgaagagaac
tatctgcatgcggcggtggcattggccaccgagcgcggcttgccggtggtggccaccaac
gacgtgcgcttcctggtggaagacgattttgacgctcatgaaattcgcgtcgccattcac
gacggatttacgctggacgatcccaagcggccgcgcaactacagcccgcagcaatacatg
cgcagcgaagacgagatgtgcgagctgttcgccgacatcccggaagcgctgctgaacagc
gtcgagatcgccaagcgctgtaacgtcaccattcgcctcggcgaatacttcctgccgcag
ttcccaaccggcgatatgagcaccgaggacttcctggtgctcaaatcgaaagagggcctg
gaagagcgtctcgagttcctgttccccgatcctgaagtgcgcgcgcagcgccgcccggaa
tacgacgagcgtctggacgttgagctgaaggtgatcaaccagatggggttccccggctac
ttcctgatcgtgatggagtttatccagtggtcgaaggacaacaacgtgccggtgggccca
gggcgcggctccggcgccggttctctggttgcctatgcgttgaaaatcaccgacctcgat
ccgctggaattcgacctgctgttcgaacgcttcctgaacccggaacgtgtttcgatgccc
gacttcgacgtcgacttctgcatggagaagcgcgaccaggtgatcgagcacgtggcggag
atgtacggccgcgaagcggtatcgcagatcatcaccttcgggaccatggcggcgaaagcg
gttatccgcgacgtaggccgggtgctggggcacccgtacggcttcgtcgatcgcatctcc
aaactggtgccgccggatccgggcatgacgctggagaaagcctttgccgccgaaccgcag
ctgccggagatttacgaggccgatgaagaggtcaaggcgctgatcgacatggcgcgcaag
ctggaaggggtaacgcgcaacgccggtaaacacgccgggggcgtggtgatcgcgccgacc
aagatcaccgacttcgcgccgctgtactgcgacgccgaagggcaccatccggtgacccag
ttcgacaagaacgacgtggaatatgccgggctggtgaagttcgacttcctcggcctgcgc
accctgaccatcatcgactgggcgctggaaatgatcaacgcccggcgcgccaagaccggg
ctggaaccgatcgacatcgccgccattccgctcgacgacaagaaaagcttcgacatgctg
cagcgctcggaaaccacggcggtgttccagcttgaatcgcgcggcatgaaagatttgatc
aaacgcctgaagcccgactgcttcgaagacatgatcgcactggtggcgctgttccgtccg
gggccgctgcagtcagggatggtggataacttcatcgaccgcaagcatggccgcgaagag
atctcctacccggacattcagtggcagcacgagtcgctcaagccggtgctggaaccgacc
tacggcatcatcctgtatcaggaacaggtgatgcagattgcccaggtgttggccggctac
accttgggtggcgcggatatgctgcgtcgtgcgatgggtaaaaagaacccggtcgaaatg
gccaagcagcgcggcggctttgaagacggcgcgaaatcgcgcggcatcgacggtgaactg
tcggtgaaaatcttcgacctggtggagaaattcgccggttacggcttcaacaaatcgcac
tccgccgcctatgcgctggtgtcgtatcagacgttgtggctgaaggcgcactatccggcc
gagtttatggcggcggtcatgaccgccgatatggacaacaccgacaaagtggttgggctg
gtggacgaatgttggcgcatggggctgaagatcctgccgccggacatcaacagtggcctg
tatcacttccacgtcaacgacgacggcgagatcgtttacggcatcggcgcgatcaagggc
gtgggggaagggccgatcgaggccattatcgaggcgcgcaacagcggcgaacaaggttac
ttcaaagacctgttcgacctgtgcgcgcgctctgacatcaagaaactgaaccgccgcatt
ctggaaaaactgatcatgtccggggcgttcgatcgccttgggccgcaccgcgccgcgctg
atgaattcgctcggcgacgcgttgaaagcggcggatcagcatgcgaaagccgaagctatt
ggccaggtggatatgtttggcgtactggcggaagcgccggagcaggtggagcaatcctac
gccaatattgcgccctggccagagcaggtggtgctggacggtgagcgggagacgctgggg
ctctacctgactggccacccgatcacccagtacctgaaggaaatcgaacgttacgccggt
ggccagcgtttgaaagacatgcacccgacggatcggggcaaaatgactaccgccgtcggg
ttggtggtcgccgcgcgggtcatggtgaccaagcgcggcaaccgtatcggcatttgcacg
ctggatgaccgttcgggccgtctggaagtgatgctattcaccgaagcgctagaaaaatac
cagcatttgttggaaaaagaccgtatccttatcgccagtggacaggtcagctttgatgac
tttagcggcgggcttaaaatgatggcccgcgaggtaatggacatcagtgaagcccgggaa
aaatacgctcgcgggcttgctatctcgctgactgacaggcaaattgatgaccagcttttg
aaccgtctccgtcagtcgttggaaccccatcgctcggggacgattccagtgcatctctac
tatcaacgggaagatgcacgagccaagctgcgttttggcgcaacctggcgcgtgacgccc
accgaccgcttgttgatcgacttgcggacgttggtaggcaatgagcaggtggacttggaa
tttgactaa
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