Serratia marcescens subsp. marcescens Db11: SMDB11_3532
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Entry
SMDB11_3532 CDS
T03985
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
smac
Serratia marcescens subsp. marcescens Db11
Pathway
smac02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SMDB11_3532 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smac03021
]
SMDB11_3532 (rpoD)
Transcription machinery [BR:
smac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SMDB11_3532 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Sas-6-like_oligomerization
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
CDG14095
UniProt:
A0ABC9IMN5
LinkDB
All DBs
Position
3757792..3759633
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AA seq
613 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENSNSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITGFVDPNAEEDIAPTA
THIGSELSSEEQDDDEEDEDAEDDDTEDDNSIDPELARQKFAELRDQYEATRLVIKKNGR
SHASAADEILKLSEVFKQFRLVPKQFDFLVNSMRTMMDRVRTQERIIMKLCVEQCKMPKK
NFVTLFAGNETSDSWFEAALAMAKPWSEKLKDVAEDVQRSLQKLRQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESL
RSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccagatgattaacgacatgggcatccaggtgatggaagaagcaccg
gacgccgatgacctgctgctcgccgaaaactcgaacagcacggacgaagatgcggaagaa
gccgccgcacaggttctgtccagcgtggaatccgaaatcggccgcaccaccgacccggtg
cgcatgtacatgcgcgaaatgggtaccgtcgaactgctgacgcgcgaaggcgaaatcgac
atcgccaagcgcatcgaagacggcatcaaccaggtgcagtgctcggttgccgaatacccg
gaagccatcacctacctgcttgagcagtacgatcgcgtcgaagcgggcgaagcgcgcctg
tccgatctgatcaccggcttcgtcgatcctaacgcggaagaggacatcgccccaaccgcg
acccacatcggttctgaactgtcgagcgaagagcaagacgacgacgaagaagatgaggac
gccgaagacgacgacaccgaagacgacaacagcatcgatccggagctggcgcgtcagaag
ttcgccgagctgcgcgatcagtatgaagcgacacgtctggtgatcaagaagaacggccgc
agccacgccagcgcagcggacgagatcctgaagctgtctgaagtgttcaagcagttccgc
ctggtgccgaaacagttcgacttcctggtcaacagcatgcgcaccatgatggaccgcgtt
cgcacccaggaacgcatcatcatgaagctgtgcgttgagcagtgcaaaatgccgaagaaa
aacttcgtcaccctgttcgccggcaacgaaaccagcgattcctggttcgaagccgcactg
gcgatggccaagccatggtcggaaaagctgaaagacgtggccgaagacgtgcagcgcagc
ctgcagaaactgcgtcagatcgaagaagaaaccggcctgaccatcgagcaggtcaaagac
atcaaccgtcgcatgtcgatcggtgaagcgaaagcccgccgcgcgaagaaagagatggtt
gaggccaacctgcgtctggttatttccatcgccaagaaatacaccaaccgcggcctgcag
ttcctggatctgatccaggaaggcaacatcggcctgatgaaagcggtagacaagttcgaa
tatcgccgcggctacaagttctcgacgtacgccacctggtggatccgtcaggctatcacc
cgctccatcgccgatcaggcgcgcaccatccgtattccggtgcatatgattgagaccatc
aacaagctcaaccgtatttcgcgccagatgctgcaagagatgggccgcgagccgacgccg
gaagagctggccgagcgcatgctgatgccggaagacaagatccgcaaggtgctgaagatc
gccaaagagccaatctcgatggaaacgccgatcggcgacgacgaagattcgcatctgggc
gacttcatcgaggataccaccctcgagctgccgctggattccgcgacctcagagagcctg
cgttccgctacccacgatgtgctggccggcctgaccgcgcgcgaagcgaaagtgctgcgc
atgcgtttcggtatcgacatgaacaccgaccacacgctggaagaggtaggcaagcagttt
gacgttacccgtgagcgtattcgtcagatcgaagccaaggcgctgcgcaagctgcgtcac
ccgagccgttccgaagtgctgcgcagcttcctggacgattaa
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