Serratia marcescens subsp. marcescens Db11: SMDB11_4262
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Entry
SMDB11_4262 CDS
T03985
Symbol
rhlB
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
smac
Serratia marcescens subsp. marcescens Db11
Pathway
smac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMDB11_4262 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smac03019
]
SMDB11_4262 (rhlB)
Enzymes [BR:
smac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SMDB11_4262 (rhlB)
Messenger RNA biogenesis [BR:
smac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SMDB11_4262 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CDG14822
UniProt:
A0ABC9IPQ2
LinkDB
All DBs
Position
complement(4570334..4571620)
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AA seq
428 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPLVLEALEKKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLTHPAKQDRQTNQPRALIMAPTRELAVQIHSDAEALSQSTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYTKQNYVDLGAMQVVVLDEADRMYDLGFIKDIR
WLFRRMPTADQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
DFTKGNLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIETYIDHSIPVSKYNSDALLTDLPAPKRLSRPRGGNGPRRNSAPRRGGAP
RSNRKRPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttgaccgaacagaagttttccgacttcgccctgcacccgttagtc
cttgaagcccttgagaaaaaagggtttcacaattgcacgcctatccaggcgttagcattg
ccgctcacgctctccgggcgtgacgttgcaggtcaggcgcaaaccggtaccggaaagacg
ctggcgtttttggcgtctacttttcactatttgctgactcacccggcgaaacaggatcgc
cagaccaatcagccgcgcgccttgatcatggcgcctacgcgtgaactggcggtgcaaatc
cactccgatgctgaagcgctctcccagagcaccggcctcaaactgggcctggcctacggc
ggcgacggctacgacaaacagctgaaagtgctggaaagcggcgtggacattctgattggc
accaccggccgtttaatcgattacaccaagcagaactatgtcgatctcggcgcgatgcag
gttgtcgtgctggatgaagccgatcgcatgtacgatcttggctttatcaaagacatccgt
tggctgttccgccgtatgcctacggccgatcaacgcctgaacatgctgttctccgctacc
ctgtcctatcgcgtacgcgaattggccttcgagcagatgaacaacgccgaatatgttgaa
gtggaaccggaacagaaaaccggccaccgcattaaagaagagctgttctacccgtccaac
gaagaaaaaatgcgtctgctgcagacgctgatcgaagaagagtggccggatcgcgccatc
atcttcgccaacaccaagcaccgctgcgaagacatctggggccatctggccgccgacggt
caccgcgtcggcctgctgaccggtgacgtggcgcagaaaaaacgcctgcgcatcctcgac
gatttcaccaagggcaacctggatatcctggtcgccaccgacgtcgccgcgcgcggtctg
cacattcccgccgtcacgcacgtcttcaactacgatctgcctgacgactgcgaagactac
gtgcaccgcatcggccgtaccggccgagcaggcgccagcggccactccatcagcctggcg
tgtgaagagtacgcgctcaacctgccggcgatcgagacctatatcgaccacagcattccg
gtgagcaagtacaacagcgatgcgctgctgaccgatctgccggcgccgaagcgcctgtcg
cgtccgcgcggcggcaacggcccacgtcgcaactccgcgcctcgtcgcggcggcgcgccg
cgcagcaaccgtaaacgcccgagctga
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