Serratia marcescens subsp. marcescens Db11: SMDB11_4388
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Entry
SMDB11_4388 CDS
T03985
Symbol
thiC
Name
(GenBank) thiamine biosynthesis protein
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
smac
Serratia marcescens subsp. marcescens Db11
Pathway
smac00730
Thiamine metabolism
smac01100
Metabolic pathways
smac01240
Biosynthesis of cofactors
Module
smac_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
SMDB11_4388 (thiC)
Enzymes [BR:
smac01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
SMDB11_4388 (thiC)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
CDG14948
LinkDB
All DBs
Position
complement(4711612..4713555)
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AA seq
647 aa
AA seq
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MSNINPPRARKAQREAAQQFIDTLQGMAFPNSRRIYLQGSRRDIQVPMREIQLSPTLVGG
SKDSPQYEQNEAIPVYDTAGPYGDPQAELDVHAGLAKLRAGWIDARGDTTTLSGASSGFT
QQRLADEGLDHLRFEHLPLPRKALPGKCVTQLHYARAGIVTPEMEFIAIRENMGRERIRG
EVLRHQHPGQGWGANLPDNITPEFVRQEVAAGRAIIPANINHPEAEPMIIGRNFLVKVNA
NIGNSAVTSSIEEEVEKLVWATRWGADTVMDLSTGRYIHETREWILRNSPVPIGTVPIYQ
ALEKVNGVAENLTWAMFRDTLLEQAEQGVDYFTIHAGVLLRYVPMTAKRLTGIVSRGGSI
MAKWCLSHHQENFLYQHFREICEICAAYDVSLSLGDGLRPGSIQDANDEAQFAELHTLGE
LTKIAWEYDVQVMIEGPGHVPMQMIRRNMTEELEHCHEAPFYTLGPLTTDIAPGYDHFTS
GIGAAMIGWFGCAMLCYVTPKEHLGLPNKEDVKQGLITYKIAAHAADLAKGHPGAQIRDN
AMSKARFEFRWEDQFNLALDPATARAYHDETLPQESGKVAHFCSMCGPKFCSMKISQEVR
DYAAAQEAAKPIEVQLTGMEKMSAEFRARGSELYHSAGSLQEETNND
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacattaatcccccgcgcgcccgtaaagcgcaacgcgaagccgcccagcagttt
atcgacacgctgcaaggcatggctttcccaaactcacgccgcatctacctgcagggctcg
cgccgcgatatccaggtgccgatgcgcgaaattcagctcagtccgaccctggtcggcggc
agcaaagatagcccgcagtatgaacagaacgaggcgatcccggtgtatgacaccgccggc
ccctacggcgatccgcaggccgagctcgatgtgcacgccggcctggccaagctgcgcgcc
ggctggatcgacgcgcgcggcgataccacgactctcagcggcgccagctccggcttcacc
caacagcggctggcggacgaggggctggatcacctgcgcttcgaacatctgccgctgccg
cgcaaggcgttgccgggcaagtgcgtgacccagctgcactatgcccgcgccggcatcgtc
accccggagatggagttcatcgccatccgtgaaaacatggggcgcgagcgcattcgcggc
gaggtgctgcgccaccagcatccgggccagggctggggcgccaacctgccggacaacatc
acgccggagttcgtgcgccaggaagtggccgccggccgcgccatcattcctgccaacatc
aatcacccggaggcggagccgatgatcatcggccgcaatttcctggtgaaggtgaacgcc
aatatcggcaactcggcggtcacgtcgtcgatcgaagaagaggtggagaagctggtgtgg
gccacccgctggggcgcagacaccgtgatggatctctccaccggccgctatattcacgaa
acccgcgagtggatcctgcgcaacagcccggtgcccatcggcaccgtgcctatctaccag
gcgctggagaaggtcaacggcgtggcggaaaacctcacctgggcgatgttccgcgatacg
ctgctggaacaggcggaacaaggggtcgactacttcaccatccacgccggcgtgctgctg
cgctacgtgccgatgaccgccaaacgcctgaccggcatcgtgtcgcgcggtggctcgatc
atggccaaatggtgcctgtcgcaccatcaggaaaacttcctctatcagcatttccgtgaa
atctgcgagatctgcgccgcctacgacgtttcgctgtcgctcggcgacggcctgcgcccc
ggctcgattcaggacgccaacgacgaagcccagttcgccgagctgcatacgctgggcgag
ctgaccaaaatcgcctgggaatacgacgtgcaggtgatgatcgaaggcccgggccatgtg
ccgatgcagatgatccgccgcaatatgaccgaagaactggaacactgccacgaagcgccg
ttctacaccctcggcccgctgaccaccgatatcgccccgggctatgaccatttcacctcc
ggcatcggcgcggcgatgatcggctggttcggctgcgccatgctgtgttacgtcacgccg
aaagagcacctcggcctgccgaacaaagaagacgtcaaacagggcctgatcacctacaag
atcgccgcccacgccgccgatctggccaagggccatccgggcgcgcagatccgcgataac
gccatgtccaaggcgcgtttcgaatttcgctgggaagatcagttcaatctggcgctcgat
ccggccaccgcgcgcgcctatcacgacgaaaccctgccgcaggaatccggcaaggtcgcc
cacttctgctcaatgtgcgggccgaaattctgctcgatgaagatttcgcaggaggtgcgc
gactacgccgccgcccaggaggccgccaagccgatcgaagtgcagctgaccggcatggag
aaaatgtccgccgaattccgtgcccgcggcagcgagctgtatcacagcgccggctccctg
caagaggagacaaacaatgactga
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