Serratia marcescens subsp. marcescens Db11: SMDB11_4482
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Entry
SMDB11_4482 CDS
T03985
Symbol
hfq
Name
(GenBank) HF-I, host factor for RNA phage Q beta replication
KO
K03666
host factor-I protein
Organism
smac
Serratia marcescens subsp. marcescens Db11
Pathway
smac02024
Quorum sensing
smac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMDB11_4482 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SMDB11_4482 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smac03019
]
SMDB11_4482 (hfq)
03036 Chromosome and associated proteins [BR:
smac03036
]
SMDB11_4482 (hfq)
Messenger RNA biogenesis [BR:
smac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SMDB11_4482 (hfq)
Chromosome and associated proteins [BR:
smac03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
SMDB11_4482 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
CDG15042
UniProt:
A0ABC9IQL3
LinkDB
All DBs
Position
4825860..4826168
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AA seq
102 aa
AA seq
DB search
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNPSGGSSNYHHGNNPSAQQQPQQESDDAE
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggggcaatctttgcaagatccgttcctgaacgcattgcgtcgtgaacgtgtt
ccggtttctatttatttggtgaatggtattaagctgcaaggccagattgagtcttttgac
cagtttgtcatcctgttgaagaacacggttagccagatggtgtacaagcacgctatctct
accgttgtcccgtcacgcccggtttcgcatcacagcaacaacccgagcggcggttcaagc
aactatcaccatggcaacaatccgtctgcgcagcaacagccgcagcaggaaagcgatgac
gctgaataa
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