Serratia marcescens subsp. marcescens Db11: SMDB11_4547
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Entry
SMDB11_4547 CDS
T03985
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smac
Serratia marcescens subsp. marcescens Db11
Pathway
smac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMDB11_4547 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smac03019
]
SMDB11_4547 (deaD)
03009 Ribosome biogenesis [BR:
smac03009
]
SMDB11_4547 (deaD)
Enzymes [BR:
smac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SMDB11_4547 (deaD)
Messenger RNA biogenesis [BR:
smac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SMDB11_4547 (deaD)
Ribosome biogenesis [BR:
smac03009
]
Prokaryotic type
rRNA helicases
SMDB11_4547 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
CDG15108
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All DBs
Position
4891041..4892978
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AA seq
645 aa
AA seq
DB search
MTTEFETSFADLGLSAPIISALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNLQADLKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDLYRALLTKLQPEEELDME
TLAAALLKMAQGERPLILPPDPVFKPRQRREFNDRDDRRGDRGDRRDSRDSRDGDRPRRE
RRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG
EILNHFTRTRILNKPMNMQLLGDAQPFERRERRDGGNGGERRGNGNGRPFNGERREGGPR
RSFGERREGGNGGERRGGNYNRDGKPAPRRDDSAPAAPRRRFGDA
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgacgactgagtttgaaacctcttttgctgatctggggctgtctgctccaatcatttcc
gccctgaacgatctgggctatgaaaaaccatctccgatccaggctgagtgtattcctcac
ctgttgaacggccgcgacgtgctgggcatggcacagaccggtagtggtaaaaccgcagcg
ttctcgctgccgctgctgcacaacctgcaggcagacctgaaagcacctcagatcctggtg
ctggcaccgacccgcgaactggcggttcaggttgccgaagcgatgaccgatttctccaaa
cacatgaacggcgtcaacgtggtagccctgtacggcggccagcgttacgacgtacagctg
cgcgctctgcgccagggcccgcaaatcgttgtgggtaccccaggtcgtctactggaccac
ctgaagcgcggcaccctgaacctctctaacctgagcggtctggtgctggatgaagccgac
gaaatgctgcgcatgggctttatcgaagacgtagaaaccatcatggctgagatcccggca
gaacatcagaccgcgctgttctccgccaccatgccggaagcgatccgtcgcattacccgc
cgcttcatgaaagagccgcaggaagtgcgcatccagtccagcgtgactacccgtccggac
atcagccagagctactggtcggtctacggcatgcgtaaaaacgaagcgctggtacgtttc
ctggaagccgaagactttgacgcggcgatcatcttcgttcgtaccaagaacgcgaccctg
gaagtggccgaagcgctggagcgcagcggttacagcagcgccgcgctgaacggcgacatg
aaccaggcgctgcgtgagcagaccctggagcgcctgaaagacggtcgtctggatatcctg
atcgcgaccgacgttgcggcccgcggcctggacgttgagcgcatcagcctggttgtcaac
tatgacatcccgatggactccgagtcctacgttcaccgtatcggccgtaccggccgtgcg
ggtcgcgccggccgtgcgctgctgttcgtggaaaaccgcgaacgccgcctgctgcgcaac
atcgagcgcaccatgaagctgaccatccctgaagtggagctgccaaacgcagaactgctg
ggcgagcgtcgtctggccaagttcgccgcgaaagttcagcagcagctggaaagcagcgat
ctggatctgtaccgcgcactgctgaccaaactgcagccggaagaagagctggatatggaa
accctggccgcagcgctgctgaaaatggctcagggtgaacgtccgctgatcctgccgccg
gatccggtcttcaaaccgcgccagcgccgtgagttcaacgaccgtgacgatcgtcgcggt
gatcgtggcgaccgtcgcgacagccgcgatagccgtgacggcgaccgtccgcgtcgcgaa
cgtcgtgacgttggcgaaatgcagctgtaccgcattgaagtgggccgtgacgatggcgta
gaagtccgtcacatcgttggcgctatcgctaacgaaggcgacatcagcagccgttacatc
ggtaacatcaagctgttcgcttcccactccaccatcgagctgccaaaaggcatgccgggc
gagatcctgaatcacttcactcgcactcgcatcctgaacaagccgatgaacatgcagctg
ttgggcgatgcacagccgttcgaacgtcgcgagcgtcgtgacggtggcaacggtggcgag
cgtcgtggcaacggtaacggccgtccgttcaacggcgaacgtcgcgaaggcggcccacgt
cgttccttcggtgaacgtcgcgaaggcggtaacggcggcgagcgtcgtggcggtaactac
aaccgtgacggcaagccggcgccacgccgtgatgacagcgcaccggcagcaccacgtcgt
cgtttcggcgacgcgtaa
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