Stieleria magnilauensis: TBK1r_14680
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Entry
TBK1r_14680 CDS
T10880
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smae Stieleria magnilauensis
Pathway
smae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TBK1r_14680 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smae03019
]
TBK1r_14680 (cshA)
03009 Ribosome biogenesis [BR:
smae03009
]
TBK1r_14680 (cshA)
Enzymes [BR:
smae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TBK1r_14680 (cshA)
Messenger RNA biogenesis [BR:
smae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TBK1r_14680 (cshA)
Ribosome biogenesis [BR:
smae03009
]
Prokaryotic type
rRNA helicases
TBK1r_14680 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDV82537
UniProt:
A0ABX5XKM0
LinkDB
All DBs
Position
1965381..1966634
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AA seq
417 aa
AA seq
DB search
MNANQMETLEPAQASFDDLDLSPVMRRALAKAGFEKPSPIQSELIPLALQGLDVIGQART
GTGKTAAFSIPILEQLDSLEDCRDPQAIIVVPTRELADQVGREAQRLAAGVHTEIAVLAG
GKNIRTQLRQLENGVQIVVGTPGRLHDHLQRRSLRTKDVWCVVLDEADRMLDIGFRPQIE
RILRKCPRDRQTLLLSATLPPTVQRLAESYMVDPIVIDCCKNEMSVETIEQHYFTVPQER
KQDLLVELLKREKPEQAIIFCRTKRGTDRLYRAISKEHPSCAAMHGDMAQRERDRVLQRL
RDRDLEILVATDVVGRGIDISTISHIINYDVPEDSDDYVHRVGRTGRMGRDGVAFTFIVP
GQGDFLTSIEQRINKLLIRDSIPGFEAPEKLAEPEKKEVDPMRKRLNPMHRKVKRRR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaaatcaaatggaaaccctcgaacctgcacaagccagtttcgacgacctggac
ctgtccccggtgatgcgccgagcgctcgcaaaagccggcttcgaaaaaccttccccgatt
caatcggaactgatccccttggcgctccaggggctcgatgtgatcggccaagcccgcacc
gggactggtaagaccgccgcgttttcgatcccgatccttgaacagctcgattcactcgaa
gactgccgcgacccgcaagcgatcatcgtcgtcccgacgcgtgagttggccgaccaggtc
ggccgcgaggcgcagcgattggcagccggcgtgcacaccgaaatcgcggtgttggccggt
ggcaagaacatccgcacccaactgcgacaactggaaaacggcgtgcaaatcgtcgtcggc
acccccggacgactgcacgaccacctgcaacgacggtccctccgcaccaaagacgtctgg
tgcgtcgtgttggacgaagccgaccggatgctggacatcggatttcggccccagatcgag
cgcatcttgcgaaagtgcccgcgagaccgacaaacgctgctactttcggcaacgctgccc
cccacggtccaacgactggccgaatcctacatggtcgacccgatcgtgatcgattgctgc
aaaaacgaaatgtcggtcgaaacgatcgagcagcattacttcacggttccgcaagaacgc
aagcaagacctgctggtcgagctgctgaaacgggagaaacccgagcaagcgatcatcttc
tgtcgcaccaaacgcggcaccgatcgcctgtatcgtgcgatcagcaaagaacatccctcc
tgtgccgccatgcacggcgacatggctcagcgtgagcgcgatcgcgttctgcaacgcttg
cgtgatcgtgacctggagatcctggtcgccaccgatgtcgtcggacgcggcatcgacatc
agcacgatctcacacatcatcaactacgacgtccccgaagacagcgacgactacgttcac
cgtgtcggacggacggggcggatgggccgcgacggcgtggcgttcacgttcatcgttccc
ggccagggtgatttcctgaccagcatcgaacagcggatcaacaaactgctgatccgcgac
tcgatccccggattcgaagcccccgagaaactggccgaaccggagaagaaagaggtcgac
ccgatgcgaaaacggctcaacccgatgcaccgcaaagtcaaacgccgccgctag
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