Stieleria magnilauensis: TBK1r_16320
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Entry
TBK1r_16320 CDS
T10880
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
smae Stieleria magnilauensis
Pathway
smae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TBK1r_16320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smae03021
]
TBK1r_16320
03019 Messenger RNA biogenesis [BR:
smae03019
]
TBK1r_16320
Transcription machinery [BR:
smae03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TBK1r_16320
Messenger RNA biogenesis [BR:
smae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TBK1r_16320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
S1CSD-TOTE-2
NACHT
DUF6887
AAA
Motif
Other DBs
NCBI-ProteinID:
QDV82700
UniProt:
A0ABX5XMV0
LinkDB
All DBs
Position
2193739..2195253
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AA seq
504 aa
AA seq
DB search
MQSNRPSGDEHRADDRGPKRHGGSRDYSSHRRQRQQRHPDKVVDRRIRELDAERDPLSLP
EEIVSEATKVGQRVGIPSGGDGPQLNLAQLQEMEDSKLFEMAREDAIPDFEMMTKQELIF
AVLKHRMKVGGLMYGEGTLEILPDGFGFLRSSKHHYVSCPDDIYVSPSQIRRFGLQTGSH
VAGQIRPPKENERYFALLRIEAINRRDPSQRNAAIPFEDLTPLHPDRRIMMEHEGGEMST
RVVDMLTPIGFGQRGLIVSPPRAGKTVLMQNMARAVLANYPEAYVFILLIDERPEEVTDM
EREVRGPQCEVISSTFDEPAQRHIQVAQMVIEKAKRMVEAGVDVVVFLDSITRLARAHNS
DGESTGKLLSGGLDAGAMQKPKSIFGSARKTEEGGSLTIIATALVDTGSKMDDVIFEEFK
GTGNLEIVLDRALVDRRIWPAIDISRSGTRREEMLLDKEEFKRISAVRRALSEVSPVDAM
DDLIKRLKKTQNNAEFLLSVKDVD
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccaatcggccttcgggcgacgaacaccgcgctgatgatcgcggaccaaaacgt
catggcggatcacgtgattattccagtcaccgccggcaacgccaacaacgacatccggac
aaggtcgtcgatcgacgtatccgcgaactcgacgcagaacgagatccgctctcgctgccc
gaagagatcgtcagcgaagcgaccaaggtcggacaacgcgtcgggattccctccggcggc
gacggtccccagctgaacctggcccagttgcaggagatggaggactcgaaactgtttgaa
atggctcgcgaagacgcgatccccgactttgagatgatgacgaagcaggagctgatcttt
gccgtcttgaagcaccgcatgaaagtcggtggtttgatgtatggcgaagggacgctggag
atcctgcccgacgggttcgggtttctgcggagcagcaaacatcattacgtctcgtgtccc
gacgacatctatgtttcgcccagccaaattcgacgcttcggactgcaaaccggcagccat
gtcgccggccagatccgtccgcccaaagaaaatgaacgctatttcgccctgctgcgaatc
gaggcgatcaatcgacgcgacccctcgcaacgcaacgccgcgatcccgtttgaggacctg
acgccgttgcatcccgatcgtcggatcatgatggagcacgaaggcggcgagatgtccaca
cgcgtggtcgacatgttgacgccgatcgggtttggacaacgtggtttgatcgtcagccca
ccccgcgccggcaaaaccgtgctgatgcaaaacatggctcgcgcggtcctggcaaactat
cccgaagcctatgtgtttattctgctgatcgatgaacgtcccgaagaagtgacggacatg
gaacgcgaagtccgtgggccgcagtgcgaagtcatcagcagcacgtttgacgaacccgcc
cagcgacacatccaagtcgctcagatggtgatcgaaaaagccaaacggatggttgaagcc
ggcgtcgacgtggtcgtcttcctcgattcaatcacgcggctggcccgggcccacaacagt
gacggcgaatccaccggcaagttgctcagcggcggtctggatgccggcgcgatgcagaaa
cccaagtcgatctttggctcggcccgaaaaaccgaagagggcgggtcgctgacgatcatc
gccaccgcgttggtcgacaccggtagcaagatggatgacgtgatctttgaggaattcaaa
gggaccggaaatctggaaatcgtcttggaccgggcgttggtggatcgacggatctggccg
gcaatcgacatcagccgaagcggcacgcgccgcgaagaaatgctgctggacaaagaggag
ttcaaacggatctctgcggtgcgacgcgcgttgtccgaggtctcgccggtcgatgccatg
gacgacctgatcaaacggttgaaaaagacacagaacaatgccgagtttttgctgagcgtg
aaggatgttgactga
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