Stieleria magnilauensis: TBK1r_16730
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Entry
TBK1r_16730 CDS
T10880
Symbol
pcrA_1
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
smae Stieleria magnilauensis
Pathway
smae03420
Nucleotide excision repair
smae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TBK1r_16730 (pcrA_1)
03430 Mismatch repair
TBK1r_16730 (pcrA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smae03400
]
TBK1r_16730 (pcrA_1)
Enzymes [BR:
smae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TBK1r_16730 (pcrA_1)
DNA repair and recombination proteins [BR:
smae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TBK1r_16730 (pcrA_1)
MMR (mismatch excision repair)
Other MMR factors
TBK1r_16730 (pcrA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
AAA_12
Vps16_C
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
QDV82741
LinkDB
All DBs
Position
2249207..2251600
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AA seq
797 aa
AA seq
DB search
MDAPHSDALLRELTAPQCEAVQHVDGPMLILAGPGSGKTRVVTHRIAYLLSQNIPDWQIA
ALTFTNKAADEMRLRLDKLAPGQKVWMGTFHRFCAQLLRRYASMVGLQENYSIYDTSDSK
QAMKRATEAAGVSTTHASPDQIANVISKAKNKLITPDVMEGQMLSPKETVAAKVYPVYQR
QLLTANAVDFDDLLLHVANLLRHSPELRGELDQRFRYILVDEYQDTNLAQYAIVRALSID
HPNLSVTGDPDQSIYGWRGADLNNILDFEKDYPSVKTVRLEQNYRSTPNVLRVADQLIRH
NRRRKQKNLFTDNDEGEPVILRWFENGYEEADSIADEIVAAISSDLARPNDFAIFCRMNS
LTRSLEHALRGRGVPYQIVNGVEFYQRKEIKDVLAYLHLVNNPGHDVALTRVINTPTRGI
GAKTVQRIQAFADSHNIPMLEAARRAEQIESLAKRSVTMVKKFVTIYDRIAARATAPLEE
LMRCVVQESGYDKFLEKNSDDADDSSPLGNVDELISAAVDFDRRHPDDGSLEAFLEQVAL
VSDTDAFEENDQRVTLMTLHASKGLEFPRVFIIGVEDDLLPHKRSKEDDAQFEEERRLLF
VGITRAKQWLQLSCCKRRMIRGDTRPVIASPFLNELPLEEMKRIESTVQRNYFDHDIDQS
GGGDWDLPEIQIRDEVQADVSFDFGANQDEDVLSADDQAREPAPTFDAVAEESSPQEVKS
QSIPEIGALKTAADLMSGNRPPLTAFREGTTVRHYDYGEGTILAVSGLGPKRMARVQFAD
GEHNFRLAFAKLEVVGP
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggatgctccccacagcgacgctttgctccgcgaactgacagccccgcaatgcgaagcg
gttcagcacgtcgacgggccgatgctgattttggccggcccgggcagcggaaagacgcgg
gtggtcacgcaccggatcgcatatctgttgtcccagaacattccggactggcagattgcg
gcgttgacgtttaccaacaaagccgccgatgagatgcgcttgcggttggacaaactggcg
ccggggcaaaaggtctggatgggcacctttcaccgtttctgtgcccagttgttacggcgt
tatgcgtcgatggtggggctgcaagagaattattcgatttacgacacgtcggattcgaag
caggcgatgaaacgtgcgaccgaagccgccggagtctccacgacccatgcgtctcccgat
cagatcgccaacgtgatcagcaaggcgaaaaacaagctgatcacgccggatgtcatggaa
ggccagatgctgtcgcccaaagaaacggtggccgccaaggtgtacccggtttatcagcgc
cagttgctgacggccaacgcggtcgactttgatgacctgctgttgcacgtcgccaatttg
ttgcggcacagtcccgaattgcggggcgagctggaccagcgatttcgctacatcctggtt
gacgaataccaggacaccaatctggctcagtacgcgatcgtccgggcgctctcgatcgat
caccccaacctatcggtcaccggagacccggatcaatcgatctatggctggcgcggtgcc
gacctgaacaacatcctggattttgaaaaagattacccctcggtcaaaacggttcggctg
gaacaaaactatcgcagcacgcccaacgtgttgcgggtcgccgaccaattgatccgtcac
aaccgacgccgcaaacaaaagaacctgttcaccgacaacgacgaaggggaaccggtgatc
ttgcggtggttcgaaaacggctatgaggaggccgattcgatcgctgatgagatcgtcgcc
gcgatttcgtctgacctcgcccggcccaacgattttgcaatcttttgccgtatgaattcg
ctgacgcggtcactcgaacacgcactccgcggccgtggcgttccctatcaaatcgtcaac
ggcgtcgagttctatcagcggaaagaaatcaaggacgtcttggcgtacctgcatctggtc
aacaatcccggtcacgacgtcgccttgacgcgtgtgatcaacaccccaacgcgaggaatc
ggcgccaagacggtccagcggatccaggcgtttgccgacagccacaacatccccatgttg
gaagccgctcgacgcgccgagcagatcgaatcgctggccaaacgcagcgtcacaatggtc
aagaaatttgtcacgatctacgaccggatcgccgcccgcgcgaccgctccgctggaggag
ttgatgcggtgtgtggttcaagagtcggggtacgacaagtttttggaaaagaattccgac
gatgcggacgattccagtccgctgggaaacgtcgacgaattgatcagtgccgcagttgac
tttgatcgtcgacatcccgacgacggatcgctggaagcgtttctggaacaagtcgcactg
gtcagcgacaccgatgccttcgaggaaaacgaccaacgcgtcaccctgatgaccctacat
gcctccaaggggctggaatttccgcgggtctttatcatcggcgtcgaagacgatttgctg
ccccacaaacgatccaaagaggacgacgcgcaattcgaagaggagcggcggctcttgttc
gtcggtatcacccgcgccaagcaatggttgcaactgagttgttgcaaacgtcgcatgatt
cgcggcgacacgcgaccggtgatcgccagtccgtttttgaacgagctgccgttggaggag
atgaaacgcatcgagtcgacggtgcagcgaaattattttgatcacgacatcgaccagagc
ggcggcggggattgggatttgccggaaatccaaatccgcgacgaggtccaagcagacgtg
tcgttcgatttcggagccaatcaagacgaagacgtgttgtcggcggacgaccaggcccga
gaacccgcgccgacgtttgatgcggtcgccgaagaatcgtcgccgcaggaggtcaagtcg
caatcgatccccgagatcggtgcgctcaaaacggccgcggatttgatgtcgggcaatcga
ccgccgctgacggcgtttcgcgaaggcaccacggtgcggcattacgactacggcgaaggg
acgatcctggccgtcagcggactcggccccaaacgcatggcacgcgtccagttcgccgac
ggagagcacaactttcgactcgccttcgccaagttggaagtcgtcggcccgtag
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