Stieleria magnilauensis: TBK1r_20350
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Entry
TBK1r_20350 CDS
T10880
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smae Stieleria magnilauensis
Pathway
smae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TBK1r_20350 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smae03021
]
TBK1r_20350 (rpoC)
03400 DNA repair and recombination proteins [BR:
smae03400
]
TBK1r_20350 (rpoC)
Enzymes [BR:
smae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TBK1r_20350 (rpoC)
Transcription machinery [BR:
smae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TBK1r_20350 (rpoC)
DNA repair and recombination proteins [BR:
smae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TBK1r_20350 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
RnfC_N
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QDV83100
LinkDB
All DBs
Position
complement(2744609..2749015)
Genome browser
AA seq
1468 aa
AA seq
DB search
MSIGETSNYDRINDYASVRISLARPQDIKSWSFGEVKKPETINYRTYRPEKDGLFCERIF
GPEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIDLAAPVVHIWFFKAMPS
RLGNLLNMKTSSLEKVIYFQDYVVVDPGQTDLEHQQLLTEEEFRAARQQYGPGTFEADMG
AEAVRKLLNQLDLVQLSEQLRIELDETGSKQKKKDLTNRLKIVESIRDSDNRPEWMVLDV
IPVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLRKLVDLNAPEVIIRNEKRMLQQ
SVDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPRL
KLHQCGLPKKIALELYQPFIIRRLKELGHADTIKSAKKMLERKDEEVWDILEQVITNHPV
LLNRAPTLHRMGIQAFEPTLVEGNAINLHPLVCKGFNADFDGDQMAVHLPLSIEAQVEAH
TLMMSTNNVFAPSNGKPIMSPSQDIVMGCYYMTCELPDRKGEGMTFAGYDEVEFAYAQGI
VDLHAKIKMRLPKHQRLKTENGDAKYGAIIETTPGRVRFNEMLPDGMDFYNRAMRSGDLA
SAISDCYQRLGRRPTIHLLDDMMQMGFRESTRSGLSFATDDLVTPESKVGFIKEAEKEVM
RLKKAYDRGQMADDERYNMVLDEWTKARELITTDMMAAMESDVRKGGWYINPVFLMSHSG
ARGGIAQIRQLAGMRGLMAKPTGEIIETPIKANFREGLSVLEYFSSTHGARKGLADTALK
TADSGYLTRKLADVAQNVVITMDDCGTTQGITKGVVYRGEKVEVRLSDSINGRVSRKSIV
NPVTDEVVVGESEMITPEIARKIEQMGLEKLQVRSPMTCDAPLGVCRRCYGMDMSTGAMV
EEGMAVGIIAAQSIGEPGTQLTMRTFHIGGSVSKAMQESDIKSKKAGEVRLTRIRAVENA
EGRKVVLTRNGEIALVDDRGREFESYPIPTGSMLMVEDGQKVKPGETLCEWNPYSVPILS
EVSGKVRFEDIVEGETVRTEKEASGKMRMVVVDHKGDLHPQIVVEDNTGKALNVQFLPEK
ATISVVDGQDIVPGNVLAEMPRDSGGVSDITGGLPRVTEIFEARKPKDPAIIAEVDGEVE
IMPEKKRGKTTVVVRSESGIEREHLIPTGKHFLVHTGDMVKAGQSIVDGPLVPHDILRVS
GEEAVQQYLLHEIQQVYQSQKVEINDKHCEIIIARMLRKVKVESPGDTSLLPGLVIDRFQ
FRHANQELSKCIKIANAGDSDYTEGTIIPKDLFEETNAKIEAEGGTPMKGKRPKKATAST
QLLGITKAAVQSNSFISAASFQETTKVLTEAALAGKVDKLVGLKENVILGHLIPAGTGFR
LFQESEVNYRREALEALAEAPVQSLEEQFPLLEAGDEVLGPGAPVDQASSDAEAAMQQLM
NDPTPATDSDASGQPPVSDGDGETVLGE
NT seq
4407 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattggcgaaaccagcaactacgatcgcatcaacgattacgcgtcggtccgaatc
tctttggcccgaccgcaggacatcaagagctggtcgtttggtgaagtcaaaaaaccggaa
acgatcaactaccggacctatcgccccgaaaaagacgggctgttctgcgagcggatcttc
ggccccgaaaaggactgggaatgcgcctgcggcaagtaccggggcatgaagtacaagggc
atgatctgcgaccgctgtggcgtcaaagtcacgcacagtcgcgttcgccgcaagcggatg
ggccacatcgatctggccgccccggtcgtgcacatctggttcttcaaagcgatgccgtcg
cggttgggcaacctgctcaacatgaagaccagctcgctcgagaaagtgatctatttccag
gactacgtggtcgtcgatccgggccaaaccgatctggaacatcagcaattgctgaccgaa
gaggaattccgcgccgctcgccaacagtacggaccgggaaccttcgaagccgacatgggt
gccgaagcggttcgcaagctgctcaaccagttggacctggttcaactgtccgaacaattg
cggatcgagctggacgaaaccggcagcaagcaaaagaaaaaggacctgacgaaccgcttg
aagatcgtcgaatcgatccgcgacagcgacaaccgtcccgagtggatggtgctggacgtg
atcccggtcattcctccggacctgcggccgttggtgctgctggacagcggtaactttgcg
accagcgatttgaatgatctgtatcggcggatcatcaaccgcaacaaccggctgcgaaag
ttggtcgatttgaatgcgcccgaggtgatcattcgcaacgaaaagcgaatgctgcaacaa
tccgtcgacgcgttgtttgacaacaaccgttgcaagcgtccggtgctgggttcgtccaac
cggccgctgaaatcgttgacggacatgatcaaggggaaacaaggtcgtttccgcgaaaac
ctgctcggcaagcgagtcgattattcggcacggagtgtgatcgtggtcggcccgcgactg
aaattgcaccaatgtggtctgcccaaaaagatcgcgttggaactgtaccagcccttcatc
atccgccgcttgaaagagctcggtcacgccgacacgatcaagtcggccaagaagatgttg
gagcgaaaggacgaagaggtctgggatatcctggaacaggtcatcaccaaccacccggtc
ctgctcaaccgagccccgacgctgcaccggatgggcatccaggcgttcgagcccacgttg
gtcgaaggcaacgcgatcaacttgcacccgttggtttgtaagggtttcaacgccgacttc
gacggtgaccagatggccgtccacctgccgctttcgatcgaagctcaggtcgaagcccac
acgttgatgatgagtacgaacaacgtgttcgcaccgtccaacgggaaaccgatcatgagt
ccttcgcaggacatcgtgatgggttgctactacatgacgtgcgaattgcccgatcgcaag
ggcgaaggcatgacgttcgccgggtacgacgaagttgaattcgcgtacgcccagggcatc
gttgacttgcacgccaagatcaagatgcgtctgcccaagcaccaacgtctgaaaacggaa
aacggcgacgccaaatacggcgcgatcatcgagaccacgccgggacgcgttcggtttaac
gaaatgctgcccgacggcatggatttctacaaccgcgcgatgcgcagcggcgacttggcc
agcgcgatcagcgactgttatcaacgactcggtcgtcgcccgacgatccacctgctcgat
gacatgatgcagatgggtttccgtgaatcgacccgcagcggtctgtcgtttgcaaccgat
gacttggtcacgccggaatccaaagtcggcttcatcaaggaagcggaaaaagaagtcatg
cgtctgaagaaggcgtacgaccgcggtcaaatggctgacgacgaacgctacaacatggtg
ctcgacgaatggaccaaggcgcgggaattgatcacgaccgacatgatggccgcgatggag
tccgacgtgcggaagggcggttggtacatcaaccccgtcttcttgatgagtcactccggt
gctcgtggtggtatcgcccaaattcgtcagttggccgggatgcgtggtctgatggccaag
ccgaccggggagatcatcgagacgccgattaaggcaaacttccgtgaaggcctgtcggta
ttggaatacttcagttccacgcacggtgcccgaaagggtctggccgacacggcactgaag
accgccgacagcggttacctgacccggaaactggctgacgtcgcgcagaacgtcgtcatc
accatggacgattgcggcaccacccaagggatcaccaagggcgtcgtttatcgcggtgaa
aaagtcgaagtccggttgtccgattcgatcaacggacgcgtcagccgcaagtcgatcgtc
aacccggtgacggacgaagtcgtcgttggcgaaagcgaaatgatcacgcccgaaatcgct
cgcaagatcgagcagatgggcttggaaaaactgcaagtccgttcgccgatgacctgcgac
gcacccctgggtgtttgccgccgctgttacggaatggacatgtcgaccggtgccatggtc
gaagagggcatggcggtgggcatcatcgccgcacaatcgatcggcgagcccggcacccaa
ctgacgatgcggaccttccacatcggtggttcggtcagcaaggcgatgcaggaatccgac
atcaagagcaagaaggccggtgaggttcggttgacgcggatccgtgcggtcgaaaacgcc
gaaggtcgcaaggtcgttctgacgcgtaacggtgaaatcgcactggtcgatgatcgcggg
cgtgagttcgaaagctatccgatcccgaccgggtcgatgctgatggtcgaagacggccag
aaggtcaaacccggcgaaacgctttgcgagtggaacccgtactcggtaccgatcctgtcg
gaagtctccggtaaagtccgttttgaagacatcgtcgaaggcgaaacggttcgaacggag
aaagaagccagcggtaagatgcgaatggtcgtcgtcgatcacaagggtgacttgcacccc
caaatcgtcgtcgaagacaacaccggcaaggcgttgaacgttcaattcctgccggaaaaa
gcgaccatctccgtcgtcgacggccaggacatcgtgcccggtaacgtgctcgccgaaatg
ccgcgtgacagcggtggtgtttctgacatcaccggcggtctgccgcgggtcaccgagatc
ttcgaggctcgtaagccgaaagatccggcgatcatcgccgaggtcgacggtgaagtggaa
atcatgcccgaaaagaaacgtggcaagacgaccgtggtcgttcgcagcgaatcgggcatc
gaacgcgaacacttgatcccgaccggcaagcacttcctggtgcacaccggcgacatggtc
aaagccggccagtcgatcgtcgatggaccgctggtgccgcacgacatcctgcgggtttcc
ggtgaagaagcagttcagcagtacctgttgcacgaaatccaacaggtctaccaatcgcag
aaggtcgagatcaacgacaagcactgcgagatcatcatcgctcgcatgttgcggaaggtg
aaggtcgaatcgcccggtgacaccagcctgttgcccggattggtgatcgaccgattccag
ttccgtcacgccaatcaagagctgtccaagtgcatcaagatcgccaacgccggcgacagt
gattacaccgagggcacgatcattccgaaggatttgttcgaagaaaccaacgccaagatc
gaagccgagggcggcaccccgatgaaaggcaagcggcccaagaaggcgaccgccagtacg
cagttgctggggatcaccaaggcggccgtccagtcgaactcgttcatctcggcggcgtcg
ttccaggaaaccaccaaggtgttgaccgaggccgcgttggcgggcaaggtcgacaaactg
gtcggactgaaggaaaacgtcatcctgggacacctgattcccgccggtaccggtttccgc
ttgttccaagaatcggaagtcaactaccgacgcgaagcactcgaagccttggccgaagca
cccgtgcaaagcctggaagagcagttcccgctgttggaagcgggtgacgaggtcctcggg
cctggcgctccggtcgatcaagcgtcaagcgacgccgaagcggcgatgcaacaattgatg
aacgatccgacgcctgcgaccgattcggacgcgagcggtcaaccgccggtttccgacggt
gacggggaaacggttctgggcgagtag
DBGET
integrated database retrieval system
