Stieleria magnilauensis: TBK1r_32960
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Entry
TBK1r_32960 CDS
T10880
Symbol
pcrA_2
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
smae Stieleria magnilauensis
Pathway
smae03420
Nucleotide excision repair
smae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TBK1r_32960 (pcrA_2)
03430 Mismatch repair
TBK1r_32960 (pcrA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smae03400
]
TBK1r_32960 (pcrA_2)
Enzymes [BR:
smae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TBK1r_32960 (pcrA_2)
DNA repair and recombination proteins [BR:
smae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TBK1r_32960 (pcrA_2)
MMR (mismatch excision repair)
Other MMR factors
TBK1r_32960 (pcrA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
DEAD
TetR_C_35
Motif
Other DBs
NCBI-ProteinID:
QDV84351
LinkDB
All DBs
Position
complement(4484243..4486180)
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AA seq
645 aa
AA seq
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MELNAEQKRAAEFAGDDVLVLAGAGTGKTSTIVARVVHLTKIGVDPRRILLLTFTRRAAR
EMRHRLTQQIGSSAKTVPTGTFHNFCLQYLRRWPDLFECGSLTIIDRDDQLQLMKLARAN
VVGKDAAFPKSAELANYYSYARNTNRPVAEYLAEFTDHDEDAIKRISSVLQDYTKRKHEC
RYFDYDDILHLFARQLHRSRIVREKMQSRYDHILVDEMQDTNPLQWLILDGMRDPAKLFC
VGDDAQSIYAFRGADFRNVHSFTERVAGAQVLKLEQNYRSTQEILDLSNWLLDQSSLGYD
KHLRAARGPGIKPVLVELDGDFEEADWVASDLMQRHEDGDPWRDHMILTRSAWAARSVEA
ALIENDIPYRFIGGTQLLQSAHVKDLLSLLRVIDNPADQLAWMRYLTLWPRIGEKTAATT
IGKLLTMPNIKAISEFLADQYKTNPRLAESITECLTCWDRPSDVIGAATDKMTPLLEKKY
DDWDRRSKDLKLLQRLAAKHQSVGEFLETYTLDPITESEASNEDVDDLVTLITVHSAKGT
EAPVCYLIGVQPGNYPHVRSIGDDDKEEEERRVLYVAMTRAQNELFLTGTLRSHGAYVPH
HNRFYQSGGSSSQPYFLSDVPPELVQSDLDIDTDPFDAPITSFRG
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaatgccgagcaaaagcgtgccgccgagttcgccggggatgacgtgctggtc
ctggccggtgcggggacgggaaagaccagcaccatcgtcgcccgtgtcgtccatctgacg
aagatcggtgtcgacccgcgacgcattctgttgttgaccttcacccgccgcgccgcccgc
gagatgcggcatcggctgacccagcagatcggttcctcggccaagaccgtgccgacggga
acctttcacaacttttgtttgcaataccttcgtcgatggccggatctgttcgagtgcggt
tcgttgacgatcatcgaccgcgacgaccagttgcaactgatgaagctcgcccgcgcgaac
gtggtggggaaggacgccgcgtttcccaagtcggccgaactggccaattactattcctac
gcgcggaacaccaaccgtccggtcgccgagtacctggccgagttcaccgaccatgacgaa
gacgcaatcaaacggatcagcagcgtcttgcaggactacaccaagcgaaagcacgagtgt
cgatatttcgactacgacgacatcctgcacctgttcgcccggcagttgcaccgcagccgg
atcgtccgtgagaagatgcaatcgcgttacgaccatattctggtcgacgagatgcaggac
accaatccactgcaatggttgatcttggatggcatgcgtgacccggcaaaattgttttgt
gtcggtgacgacgcgcaaagcatttatgcgttccgcggtgccgactttcgcaacgtccat
tccttcaccgagcgagtcgccggcgcgcaggtgctgaaactggagcagaattatcgcagc
acccaggagatcttggatctgtccaactggttgctcgaccagtcgtcactgggctatgac
aaacaccttcgggccgcccgaggtccgggcatcaaacccgtcctggttgaattggacggc
gactttgaggaggcggactgggtggcatcggatttgatgcagcgacatgaagacggtgat
ccgtggcgtgaccacatgatcctgacccgcagcgcgtgggcggccaggagcgtcgaagcg
gccttgatcgaaaacgacatcccctatcgattcatcggcggcacgcaactgcttcaatcg
gcacacgtcaaagatctgctcagcctgctgcgtgtgatcgacaatcccgccgaccaattg
gcgtggatgcgctatctgacgctgtggccgcggatcggcgaaaagacggcggcgaccacg
atcggcaaactgttgacgatgccaaacatcaaagccatcagcgagttcctggccgatcaa
tacaaaaccaatccgcgtctggccgaatcgatcaccgagtgtctgacgtgctgggaccgg
cccagtgacgtcatcggcgccgcgacggacaagatgacgccgctgctggaaaagaagtac
gatgactgggatcgtcgcagcaaggacctgaagttgctgcaacgattggcggccaaacac
caatcggtcggcgagtttttagaaacgtacacgctggacccgatcaccgaatccgaggcc
agcaacgaagacgtcgacgatttggtgacgctgatcaccgttcacagtgccaagggaacc
gaagcaccggtgtgttatctgatcggggtccagccgggaaactatccccatgtccgcagc
atcggcgacgacgacaaggaggaagaggagcgacgggtgttgtatgtcgcgatgacgcgt
gcccagaacgaactgtttctgaccggcaccctgcgttcgcacggtgcctatgtcccgcac
cacaatcggttttatcaatccggcggatcaagctcacagccgtactttttgagcgacgtg
ccgccggagttggtgcagtcggatctggacatcgacaccgatccgtttgacgcgccgatc
acatcgtttcgcggttag
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