Stieleria magnilauensis: TBK1r_53230
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Entry
TBK1r_53230 CDS
T10880
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
smae Stieleria magnilauensis
Pathway
smae03030
DNA replication
smae03430
Mismatch repair
smae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TBK1r_53230 (dnaE)
03430 Mismatch repair
TBK1r_53230 (dnaE)
03440 Homologous recombination
TBK1r_53230 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smae03032
]
TBK1r_53230 (dnaE)
03400 DNA repair and recombination proteins [BR:
smae03400
]
TBK1r_53230 (dnaE)
Enzymes [BR:
smae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TBK1r_53230 (dnaE)
DNA replication proteins [BR:
smae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TBK1r_53230 (dnaE)
DNA repair and recombination proteins [BR:
smae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TBK1r_53230 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
Intein_splicing
LAGLIDADG_3
tRNA_anti-codon
PHP_C
Motif
Other DBs
NCBI-ProteinID:
QDV86304
LinkDB
All DBs
Position
7087472..7092388
Genome browser
AA seq
1638 aa
AA seq
DB search
MSDNASNDSIVTPAKPFVHLHCHSHYSLLDGAGDIKRLVNRAVDHGMNALALTDHGNLHG
ALEFYRAAKGAGINPIIGYEAYIAPGSRFDKGGAGRSKDASYHLTLLAKNRTGFKNLIKL
ASAASLEGFYFKPRIDKEILQTFNEGIICLSGCVSSEFSRTVMKASDTGEHEKEAMEIAG
WFHKVFGDRYFIEVMNNGLDIQRMQLEGAVDIANKMGLPVVTTSDCHYVNQEDAEAQDIM
LCINTGRFRTDTSRMKMENDQFFLRSPEQMYEHFPGMEDCVARSQEIADSVDIDIELGKY
YFPKFECPNEMKPIDYLRELCIKGLLERYEGDDERIVDGKLSDEVMARLDRELGVIEKLN
YPTYFLIVWDFVIHARNKGISATARGSGVGAIVCYALYMSHVCPLRYDLLFERFLDESRT
EPPDIDIDFEKERRVEVIEYVKERYGSENVCQIGTFGTLAARAAIKDTGRALGIPLSRVN
QITEMVPDELKITIKKALEKSADLKQTYDGDPEIRELLDLAMKIEGLARNVGTHAAAVVI
ADKPLSEYVPLTRVPGKQDVITQWSMNDVEASGLLKMDFLGLRNLTMLSRSVKFIKQTTG
KDVDPLKFPLDDKATYALLQRGETKGVFQLESGGIRDLLTRMKPDCFHDIIATAALYRPG
PLEGGMVDDYVNIKHGRQSPEYKHPVLKEILEETNSIMVYQEQVMRILNRLGGVPLAKAY
TCIKAISKKKEALINQNQEVFLKGAVESGLAQKDAEDIWNLIVKFAGYGFNKCVVGETEV
IDAVTGESTTVEELFQSKREFTIHALNDRQKLVPRKVTDVVWNGVRQTFTVTTRTGRQIT
ATGNHPMKTFDGWTNIDDLNVGDKIAVARTIEPMQTVQWSDHEVITLGWLIAEGNLCHPT
CLYFYSNSQSQVDDFVYHSEQFDETSARSDYRSDGRIEVCLSTGRDTRLGSLDHDGVGTA
VAAKRITGLRCGAYAWVQSLGLTGKKATEKHLPRAVFQFDQRQTALLLGRLWAGDGYVEQ
PSQQSYYATSSLQLAHDVQTLLQRLGIVSRVTEKSFAYAGRADGKPRNGYTVHLIGHESR
LKFLHTVGPQIVDKQAAVMSALDRIDAGEAKTTGDLVPVAVRSLVAEERVRREIPWRELE
SQSGVSIREFCRTGQSSKRGFQRSTVQRLADFFDSESLADHAQSDLFWDDIVSIEPADVV
DVYDLTVENDHNFVANGLVVHNSHSTAYALVAFQTAYLKAHYPVEFMASLLSSDIDGRNF
KRKDALVEHMEDCDRMGIEVVPPSVNTSEADFSVADGKIHFALSAIKACGGSTAISIEQE
RKKNGPFKDIFDFCERVDPHACNKSAIETLVKAGAMDCFGAKRSQLVAVIEKAMQAGAAV
QADKKSGQASLFGAFEEEEEAAGGAPAVVLPEMDEWPDREKLGNEKEVLGYYLDSHPLAE
YEPKLATFRTHTTDSLSEIQDRGEVILGGMISSIKIAHTKNPKPGAPSKYANFDLEDMQG
AIRCILWPRGFADHGEKVIPDAVVLAKGKVDRRGGGDEANLIIDELIPLDDLDNRYTHGM
RIRLDEAKHDGQTISRLREIVRGYPGNQELLFSMKLVEGELVHLKADKFKVQVTPEMRSR
IDDLLGSGNYRLMMSKPR
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacaacgccagcaacgactccatcgtcacgcccgccaagcccttcgtccacctg
cattgtcacagccactacagtttgctggacggtgccggtgacatcaaacgtctggtcaac
cgcgccgtcgatcatgggatgaacgcgttggcgttgaccgatcacggcaacctgcacggg
gcgctggaattctatcgcgcggccaaaggcgccggcatcaacccgatcatcggttacgaa
gcctacatcgccccgggcagccgtttcgacaagggcggcgccggacgcagcaaagacgcc
agctatcacctgacgctgctggccaaaaaccgtaccggtttcaagaacctgatcaagctg
gccagtgcggcgtccttggaaggattttatttcaaaccgcgaatcgataaagaaatcctg
cagacgttcaacgaaggcatcatctgcttgtcgggatgcgtgagcagtgaattcagccgc
acggtgatgaaagccagtgacaccggcgaacacgagaaggaggcgatggagatcgccggc
tggttccacaaggtgttcggcgaccgctacttcatcgaagtgatgaacaacggcttggac
atccaacgcatgcaactcgaaggcgccgtcgacatcgccaacaagatgggattgcccgtc
gtcacgaccagtgattgtcactacgtcaatcaggaagacgccgaagcccaagacatcatg
ctgtgcatcaacaccggtcgtttccgaacggacacgtcgcggatgaagatggagaacgat
cagttcttcctgcgcagccccgaacagatgtacgagcattttcccggcatggaagactgc
gtcgcgcgaagccaggaaatcgccgacagcgtcgacatcgatatcgaattgggcaagtac
tacttccccaagttcgaatgccccaacgagatgaagccgatcgactatctgcgcgagctt
tgcatcaaggggttgctggaacgctacgaaggcgacgacgaacggatcgtcgacggcaag
ctgtctgacgaagtgatggcacggctggatcgggaactcggcgtcatcgaaaaactgaac
tatccgacgtacttcctgatcgtctgggatttcgtcatccacgctcgcaacaaggggatc
tcggcgaccgcgcggggcagcggagtgggcgccatcgtgtgttacgccctgtacatgtcg
cacgtttgtccgctgcgttacgacctgctgttcgaacggtttttggacgaaagccggacc
gagccgccggatatcgatatcgacttcgaaaaagaacgtcgcgtcgaagtcatcgagtat
gtgaaagaacgctacggcagcgagaacgtttgccagatcggaacgttcggaacgctggcc
gcacgggcggcgatcaaagataccgggcgggcgttggggattcccctgtcacgcgtcaac
cagatcaccgagatggtgcccgatgagctgaagatcacgatcaagaaagcgttggaaaag
agcgcggacttgaaacaaacctatgacggtgatccggagatccgcgagctgttggatctg
gcgatgaagatcgaaggtctggcgcgcaacgtcggcacccacgccgcggccgtcgtgatc
gccgacaagccactctcggaatacgttccgctgacgcgtgtgcccggcaaacaagacgtc
atcacccagtggtcgatgaacgacgtcgaagccagcggtttgctgaagatggactttttg
gggctgcgcaacctgacgatgctcagccggtcggtgaaattcatcaaacagacgacgggc
aaagacgtcgatccgctgaagtttccgctcgacgacaaagccacctacgcgctgctgcaa
cggggtgaaacgaagggcgtgttccaattggaatccggcgggattcgtgacctgctgacg
cggatgaagcccgactgtttccacgacatcatcgccaccgccgcgttgtatcgtcccgga
ccgctcgaaggcggcatggtcgacgactatgtgaacatcaaacacggtcggcagagtccg
gaatacaagcacccggtcttgaaagagatcctggaagaaaccaacagcatcatggtttac
caggaacaggtgatgcggatcctcaaccgcctcggcggcgtcccgctggccaaggcgtac
acgtgtattaaagcgatcagtaaaaagaaagaagcgctgatcaaccaaaaccaggaggtg
ttcttaaagggcgccgtcgaaagcgggctcgcccaaaaagacgccgaagacatctggaac
ctgatcgtcaagtttgccggttacggattcaataaatgcgtcgtcggcgaaacggaagtg
atcgacgcggtcacgggagaatcgacaaccgtcgaagaacttttccagagcaaacgggag
ttcacgatccatgccctgaacgaccgccagaaactggtgccgcgaaaggtcaccgatgtc
gtttggaatggcgttcgtcaaacgttcaccgtcaccacgcgcaccggacgtcaaatcaca
gcgacgggcaaccacccgatgaagaccttcgatggctggacgaacatcgacgatctgaac
gtcggagacaagatcgcggtcgctcgaacgatcgaaccgatgcagacggtccagtggtcc
gatcacgaagtgatcactttgggatggctgatcgcagaaggaaatctttgccacccgacc
tgtttgtacttctattcgaattcgcagtcgcaagtcgacgattttgtctaccattcggag
caattcgacgagacatcggcgcgaagcgactaccgcagcgacggtcgtatcgaagtctgt
ctgtcgaccgggcgtgatacacgactgggcagtttggaccacgatggggttggaaccgcc
gtcgccgcaaaacgcatcaccgggctgcggtgcggtgcgtatgcctgggttcagtcgctc
gggctgacaggaaagaaagccaccgagaaacacctccccagagcggtgttccaattcgat
cagcgtcagacggcattgcttttgggaaggctttgggccggtgatggatatgtcgaacaa
ccgtcgcaacaatcctattatgcgacttcatccttacagcttgcccacgacgtccagacg
cttttgcaacgtttgggaattgtttctcgggtcaccgaaaagtcattcgcctacgcggga
cgggccgacggaaagccaaggaacggttacacggttcatctgatcggccacgaatcgcgg
ctgaagtttcttcacaccgtcggcccgcagatcgttgacaaacaagcagctgtgatgtca
gcgcttgatcgcatcgatgccggcgaagcgaaaacgaccggagacttggtgccggtcgcg
gtgcgctcgctcgttgcggaggaacgcgttcgtcgagagattccgtggcgcgaactggag
tcgcaaagcggtgtttcgattcgtgagttctgtcgcacggggcaatcctccaagcgaggc
tttcaacgctcgacggtccagcgtctggctgacttctttgactcggaatccctcgccgat
cacgctcaaagcgatcttttctgggacgacatcgtttccattgagcctgccgatgtggtg
gatgtctacgacttgactgtcgagaacgatcacaacttcgtggccaacggattggtcgtc
cataattcgcatagtaccgcctatgccctggttgctttccaaaccgcctacctgaaggcg
cattatccggtggagttcatggcgtcgctgttgtccagcgacatcgatggtcgaaacttc
aaacggaaagacgcactggtcgagcacatggaggactgcgatcggatgggcatcgaagtg
gtgccgccgagtgtgaacacgtccgaagccgacttcagcgtcgccgacggcaagattcac
ttcgccctgtcggcgatcaaagcctgtggcggatcgactgcgatctcgatcgaacaggaa
cgaaagaagaatggtcctttcaaagacatcttcgatttctgtgaacgcgtcgatccgcac
gcctgtaacaagtccgccatcgaaacgctggtcaaagccggcgcgatggattgtttcggc
gccaaacgcagccagttggtcgccgtgatcgaaaaagcgatgcaggccggagccgccgtg
caagccgacaagaagagcggccaagccagcctgttcggtgcgttcgaagaagaagaggaa
gctgccggaggtgcacccgcggtcgtgctgcccgagatggatgaatggcccgaccgcgaa
aaactgggcaatgaaaaagaggtcctgggctattacctggattcccacccgttggccgag
tacgagccgaaactggcgacgttccgcacgcacacgaccgactcgctgtccgaaatccag
gatcggggcgaggtgattttgggcggcatgatcagttcgatcaaaatcgcccacaccaaa
aaccccaaaccgggagcaccgtccaagtacgccaactttgatttggaagacatgcagggt
gcgatccgctgcatcctctggccacgtggctttgccgatcatggcgaaaaggtaatcccc
gacgcggtggtgttggccaaaggcaaagtcgaccggcggggtgggggcgatgaagccaac
ttgatcatcgacgaactcattccgctcgatgacctcgacaatcgctacacgcacggcatg
cgcatccggttggacgaagccaaacacgacgggcagacgatctcgcgtctacgggagatc
gtccgcggctatcccggcaaccaagaattgctgttcagcatgaagcttgtcgaaggcgaa
ttggtccacctgaaagccgacaagttcaaagtccaagtgacccccgaaatgcgatcgcgg
atcgatgacctcctcggctcagggaattaccgcttgatgatgagcaagccacgctaa
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