Stieleria magnilauensis: TBK1r_55560
Help
Entry
TBK1r_55560 CDS
T10880
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
smae Stieleria magnilauensis
Brite
KEGG Orthology (KO) [BR:
smae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smae03016
]
TBK1r_55560 (rtcB_1)
Enzymes [BR:
smae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TBK1r_55560 (rtcB_1)
Transfer RNA biogenesis [BR:
smae03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TBK1r_55560 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
TBK1r_55560 (rtcB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDV86537
UniProt:
A0ABX5XYD0
LinkDB
All DBs
Position
complement(7432867..7434339)
Genome browser
AA seq
490 aa
AA seq
DB search
MMTVTGDALATLPVGDDLSPITVIGTEPIRQSFGGETLAQAINSRRAPGVSRVVLNPDAH
VGYGAPVGCVMVSPTHIYPGPVGVDIKCSMSLLQMDLPADAIESLPVRKKLIRAICKRVP
TGAGRGQRHAPKSRRVDGKLGFQIATEGASKQVLKKLGISKSWADACEDASHTAPDGSSD
TLAARLEWMGRTRDKLDRIESKYRQLGSYGGGNHFGEAEVVQLVDSQRDLAAAFGLKAGC
VAFLSHCGSRGFGHDLAVAQFRSLKTVFQKQGLAFPAGDPQLVYAPVDSPEGRDYLCDMA
MGANFATVNHLLINDLVLEAFREVFPGVRGDLIYFISHNIARQEPIDGQVQWVHRKGATR
ALPAGHSQLVGTRFESTGHPILLPGNPRDGSSVMVANAGAAAAAFSVNHGAGRRLSRTKA
KKQLVQHEIDQGLAEHDVISNCSAYPRDEAPDAYKDFQEVLRSVRQAGLAEEVARLKAKF
VIKDGAAADD
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccgtcacgggggacgccttggcgacccttccggtcggcgatgacctttcgccg
atcaccgtgattggtaccgagcccattcgtcagtcgttcggcggcgagacgctggcccag
gcgatcaacagccgccgcgcaccgggtgtttcacgcgtcgtgctcaaccccgacgcccat
gtcggttacggcgcgccggtcggctgtgtcatggtttctcccacccacatctatcccgga
ccggtgggcgtcgacatcaagtgcagcatgagtctgttgcagatggatttgccggccgac
gcaatcgagtcgttgccggttcgaaaaaaactgattcgcgcgatttgcaaacgtgttccc
accggcgccggacgcgggcaacgccatgcccccaagtcgcgacgtgtcgacggcaaactg
gggtttcaaatcgcgaccgagggggcgtcgaaacaggtgctgaagaaactcgggatctcg
aaatcctgggccgacgcctgcgaggatgcgtctcacacggcacccgatggcagctccgac
acgttggcggcgcggctggaatggatgggacggacccgcgataaactcgatcgcatcgaa
tccaagtatcgccaactgggcagctacggtggcggcaatcatttcggcgaagccgaggtg
gtccagctggtcgactcgcaacgcgatctcgccgcagcgttcgggctcaaagctggctgc
gtcgcctttttatcgcattgcggttcacgtggtttcgggcacgacttggccgtggcgcag
ttccgttcgttaaaaacggtattccaaaaacagggtttggcgttccccgctggtgatccc
caactggtctatgcgccggtggattcacccgaaggccgtgactatctgtgtgacatggcg
atgggagccaactttgccaccgtcaatcatctgctaatcaacgacttggtactggaagcg
tttcgcgaagtctttcccggggtgcgtggcgatttgatttatttcatttcgcacaacatc
gcccgtcaagaaccgatcgatggacaggtccaatgggtccatcgcaagggcgccacccgc
gcgttgccggccgggcattcacaattggtcggcacgcggtttgaatcgaccggacacccg
atcctgctgccaggaaatccacgcgatgggtccagcgtgatggtggcaaacgcgggagcg
gcggcagcggcctttagcgtcaatcacggcgcgggacgtcggctcagtcgcaccaaggcc
aagaaacaattagtgcaacacgaaatcgatcaaggccttgccgagcatgacgtgatcagc
aattgcagtgcctatccccgcgacgaagcacccgacgcgtacaaggattttcaagaggtg
ctccggagcgtgcgtcaggccggcttggccgaagaggttgctcggttgaaagcgaaattt
gtgatcaaagacggcgcggccgccgacgactag
DBGET
integrated database retrieval system
