Serratia sp. FGI94: D781_0167
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Entry
D781_0167 CDS
T02433
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
smaf
Serratia sp. FGI94
Pathway
smaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D781_0167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smaf03019
]
D781_0167
03400 DNA repair and recombination proteins [BR:
smaf03400
]
D781_0167
Enzymes [BR:
smaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D781_0167
Messenger RNA biogenesis [BR:
smaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D781_0167
DNA repair and recombination proteins [BR:
smaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D781_0167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
MrpR_C_cat
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AGB80555
UniProt:
L0MCR2
LinkDB
All DBs
Position
180672..182516
Genome browser
AA seq
614 aa
AA seq
DB search
MGKCVSTAAVINSELLAEQVLRDTFGYQQFRPGQQTIIDAVTRGQDCLVVMPTGGGKSLC
YQIPALMLEGLTLVVSPLISLMKDQVDQLLANGVAAACYNSTQTREQQLEVMAGCRSGAI
KMLYIAPERLMMDSFLSLLDSCPPAMLAVDEAHCISQWGHDFRPEYRALGQLKQRFPAMP
VVALTATADETTRNDITRLLALQDPLIQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRG
KSGIIYCNSRAKVEDTAARLQSRGLSVAAYHAGLDNARRAQVQEGFQRDDLQVVVATVAF
GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAILLYDPADMAWLRRCLEEKP
AGQQLDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKQEACGNCDICLDPPKRYDGLEDA
RKALSAIGRVGQRFGIGYVVEVLRGSNNQRIREFGHDKLPVYGIGRDHTTEHWISVLRQL
IHLGFITQNVAMHSALQLTEAARPVLRGEVELQLAVPRIQSLKPRGGSAQKSYGGNYDRK
LFAKLRKLRKSIADEENIPPYVVFNDSTLLEMAEQMPTRASELLSVNGVGQRKLERFGTP
FMAMIRDHMDNDEE
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggggaagtgtgtgtctaccgcagcagtgataaacagcgaattgctggcagagcaggtg
ttacgcgacacctttggctatcaacaattccgtccggggcaacaaacgattatcgacgcg
gtaacccgcggccaggactgtctggtggtaatgccgaccggcggcggcaaatcgttgtgc
tatcaaatcccggcgctgatgctggagggcctgaccctggtggtttccccgctgatctcc
ctgatgaaggatcaggtggaccaactgctggccaacggcgtggcggcggcctgctataac
tcgacgcaaacgcgcgaacagcagctggaggtgatggccggctgccgcagcggtgcgatt
aaaatgctgtatatcgctcctgaacgcctgatgatggacagtttcctgtcgctgctcgac
agctgcccgccggcgatgctggcggtggacgaggcgcactgtatttctcagtggggccac
gacttccggccggagtaccgcgcgctcggccagctgaagcagcgcttcccggcgatgccg
gtggtcgcgctgacggccaccgccgatgagacgacgcgcaacgacattacgcgcctgctg
gcgctgcaggacccgctgattcaggtcagcagcttcgaccggccgaacatccgctatacg
ctggtggaaaaattcaaaccgctcgatcagctgtggcgctttgtgcaggaccagcgcggt
aaaagcggcattatttactgcaacagccgcgccaaggtggaagacaccgccgcccgtctg
cagagccgcggcctgagcgtggcggcctatcacgccggcctcgacaacgcgcggcgcgcg
caggtgcaggaaggcttccagcgcgacgacctgcaggtggtggtggcgacggtggcgttc
ggtatgggcatcaacaaacccaacgtgcgcttcgtggtgcacttcgacatcccgcgcaac
attgaatcctactaccaggaaaccggccgcgccggccgtgacggcctgccggcggaggcg
atcctgctgtatgacccggccgatatggcctggctgcgccgctgtctggaggagaagccc
gccgggcagcagctggatattgagcgccataagctcaacgccatgggcgcctttgccgag
gcgcagacctgccgccgcctggtgctgctcaactactttggcgaaggtaaacaggaagcc
tgcggcaactgcgatatctgcctcgacccgccgaagcgctacgacgggctggaggacgcg
cgcaaggcgctgtcggcgatcggccgcgtcggccagcgtttcggcatcggctacgtggtg
gaagtgctgcgcggctccaataatcagcgtatccgcgaattcggccatgacaaactgccg
gtgtacggcatcggccgcgatcacaccaccgaacactggatcagcgtgctgcgtcagctg
atccacctgggctttattacccagaacgtcgccatgcactcggcgctgcagctgaccgaa
gccgcgcgtccggtactgcgcggcgaagtcgaactgcagctggcggtgccgcgtattcag
agcctgaagccgcgcggcggctcggcgcagaaatcctacggcggtaactacgaccgcaaa
ctgttcgccaagctgcgtaagctgcgcaagtcgatcgccgatgaagaaaatattccgccg
tacgtggtgtttaacgactcgacgctgctggaaatggcggagcagatgccgacccgggcc
agcgagctgctgagcgtcaacggcgtcggccagcgcaagctcgaacgtttcggcacgccg
tttatggcgatgatccgcgaccatatggataacgacgaggagtaa
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