Serratia sp. FGI94: D781_0341
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Entry
D781_0341 CDS
T02433
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
smaf
Serratia sp. FGI94
Pathway
smaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D781_0341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smaf03019
]
D781_0341
03016 Transfer RNA biogenesis [BR:
smaf03016
]
D781_0341
Enzymes [BR:
smaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D781_0341
Messenger RNA biogenesis [BR:
smaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D781_0341
Transfer RNA biogenesis [BR:
smaf03016
]
Prokaryotic type
tRNA degradation factors
D781_0341
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
LexA_DNA_bind
HTH_20
Rho_RNA_bind
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AGB80707
LinkDB
All DBs
Position
376867..379338
Genome browser
AA seq
823 aa
AA seq
DB search
MSQDPFLEREAEKYASPIPSREFILAHLAKRETPASREELAKELNLTSDEHLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGYGFLRVEGRKDDLYLSAEQMKMAIH
GDVVLAQPLGADRKGRREARIVRVLVPKTSQIVGRFFLDAGTGFVVPDDSRLSFDILIPN
EAVAGARMGYMVVVELTQRPTRRTKAVGKIVEILGDKMGTSMAVDIALRTHEIPHTWPPQ
VEKQVADLSEQVPEEAKQGRVDLRKLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTALDDEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AQGRLSTAKFYEAVMSSHARLTYTKVWHILQGDQELREQYHPLVKHLQELHNMYKVLDQA
RAERGGIAFETEEAKFIFNAERRIERVEPTVRNDAHKLIEECMILANIAAARFVEKRNEP
ALFRVHDRPSDDHISALRSVLGELGLTLGGGNKPQPKDYATLMDEVADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALSSYGHFTSPIRRYPDLALHRAIKYQLAKEHGEPQHRWTPT
GGWHSDLDEMLQLGLHCSMTERRADEATRDVADWLKCDFMQDHVGEQFTGIIASVTGFGF
FVRLNDLFIDGLVHVSTLDNDYYRYDNIGQRLIGESSGVVYRLGDTVEIRVEAVHMDERK
IDFALISSSRKPRGEGKTERERAKKGGQRTLRDGNGNGRRRRGGKAPANFEPDSAFRKDD
AKPAGKVKKDKKAKAKKASAKTKKIAAATKAKRAGKKKGAEQG
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcttggaacgagaagcagaaaaatacgcatccccaatcccgagc
cgcgaattcatccttgcccatttggccaagcgtgagacgccggccagccgcgaagagctg
gcgaaagaactgaacctgaccagcgatgaacatctggaggcgctgcgtcgccgcctgcgc
gccatggagcgcgatggtcagctggtgtttacccgtcgccaatgctatgcgctgcccgag
cggctggacctgctgcgcggcacggttatcggccaccgcgacggctacggctttttacgc
gttgaagggcgtaaagacgacctgtatctgtccgccgagcagatgaaaatggcgatccac
ggtgacgtggtgctggcgcagccgctgggcgcggatcgcaaagggcggcgcgaagctcgc
atcgtgcgggtgctggtgccgaaaaccagccagattgtcggccgcttctttctggatgcc
ggcactggttttgtggtgcctgacgacagccgcctgagctttgacatcctgatcccgaat
gaggcggtagccggcgcgcgcatgggctatatggtggtggtagagctgacccagcgcccg
acgcgccgcaccaaggcagtagggaaaattgtcgagatcctcggcgataaaatgggcacc
agcatggcggtggatatcgcgctgcgcacccacgaaatcccgcatacctggccgccgcag
gtggagaaacaggttgccgatctcagcgaacaggtgccggaagaggctaaacaggggcgc
gtggacctgcgtaagctgccgctggtcaccatcgacggcgaagacgcccgcgattttgac
gacgccgtttactgtgagaaaaagcgcggcggcggctggcggctgtgggtagccattgcc
gacgtcagctactatgtgcgaccgggcaccgcgctggatgacgaagcgcgtagccgcggc
aactcggtctacttcccgtcgcaggtggtgccgatgctgccggaagtgctgtccaacgga
ctgtgctcgctgaacccgcaggttgaccgtctgtgcatggtgtgtgaaatgaccatctct
gcgcaggggcgtctctccaccgccaagttctatgaggcggtgatgagctcccacgcccgt
ctgacctataccaaggtgtggcacattctgcagggcgaccaggagctgcgtgagcagtac
catccgctggtcaaacacctgcaggaactgcacaacatgtacaaggtgctggatcaggcg
cgtgccgagcgcggcggcatcgcgtttgagaccgaagaggccaagtttattttcaatgcc
gaacgccgcattgaacgcgtagagccgacggtgcgcaacgacgcccacaagctgatcgaa
gagtgcatgatcctggcgaacatcgccgcggcgcgctttgttgagaagcgtaacgagccg
gcgctgttccgcgtgcatgaccgtccgagcgacgatcacatctccgcgctgcgcagcgtg
ctgggtgagctgggactgacgctgggcggcggcaacaaaccgcagccgaaagattacgcc
acgctgatggatgaagtagccgatcgtccggaccatgaaatgctgcagaccatgctgctg
cgatcgatgaagcaggcgatttacgatccggaaaaccgcggccacttcggtttggcgctg
tcgtcgtacggccacttcacctcgccaatccgccgttatcccgatctggcgctgcaccgg
gcgattaaataccagctggcgaaagagcacggcgaacctcagcaccgctggacgccgacc
ggcggctggcacagcgatctcgacgagatgctgcagctgggcctgcactgctcaatgacc
gagcgccgcgccgatgaagccacgcgcgacgtggccgactggctgaagtgcgactttatg
caggatcacgtcggcgagcagttcaccggcattattgccagcgtgaccggtttcggcttc
ttcgtccgcctgaacgacctgtttatcgacggactggtgcacgtatcgacgctggataac
gattactaccgctacgataatatcggtcagcgactgatcggcgaatcttccggtgtggtc
tatcgtctgggagatacggtggaaatccgcgttgaggcggtgcatatggatgagcgcaag
attgacttcgcgctgatctccagcagccgtaagccgcgcggcgaaggtaaaaccgagcgc
gagcgggcgaagaaaggcgggcagcgtacgctgcgcgacggcaatggcaacggccgcaga
cgtcgcggtggcaaagcgccggccaactttgagccggacagcgccttccgtaaggacgat
gccaagccggcgggcaaagtgaagaaagacaagaaggccaaggcgaagaaagcgtcggcc
aaaaccaagaagattgccgcggccaccaaggccaaacgcgccggcaagaaaaaaggtgcg
gagcagggctga
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