Serratia sp. FGI94: D781_1808
Help
Entry
D781_1808 CDS
T02433
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
smaf
Serratia sp. FGI94
Pathway
smaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D781_1808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smaf03019
]
D781_1808
03009 Ribosome biogenesis [BR:
smaf03009
]
D781_1808
Enzymes [BR:
smaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D781_1808
Messenger RNA biogenesis [BR:
smaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D781_1808
Ribosome biogenesis [BR:
smaf03009
]
Prokaryotic type
rRNA processing factors
D781_1808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AGB82100
LinkDB
All DBs
Position
complement(1903358..1906693)
Genome browser
AA seq
1111 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPNSYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KEHIAALGRPDFSSKIKMYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQAGVKAVIVPNDQMQ
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMVQPLEETPMERKRPEQPALASFSLGADAPP
PAAESAPVKKPAANQPAAPAAAAAPGLLSRFFSGLKSLFAGEEPQPAVEEKPAETAKSSS
GENRRQDRRSQRRQGSGRKERGERGERSERNERGERKERSERKERGEGRERDNREGRDRD
NRESRDEQRRNRRNAANNAPAGADAPVIDEAAKAQREEQQQQRREQRAERQRRRQEEKRQ
AQQEVQQLEKAAVEPVAAAEEDKEDRHQQPAQRRQRRQLSQKVRILSAEEELQRAAEELL
APKAPAATAEESKAPAADDSVKLLPETVAVTGEEEAQENRNGENGMPRRSRRSPRHLRVS
GQRRRRYRDERYPTQSPMPLAAAFASPEMASGKVWIGYPVTTAAQPVEETEVKSPSADIV
EQPAAETAASVAAPVIAAAQDEVQAPAAAAAAASVEPEESTPAAALPQEEVKAPQPAAVE
APADVASDAEPVAEAVPSQPEEQPAAPVAVAPAADNAAAEEQAVTEQAVEEATIAAPTEA
VVTKPAPQPVSDETAATPAPAIVAQPAETRYKHIASAPMTKAPAPAYQPEAPKHSDWQRP
AFNFDGKGSAGGHSAVSQATAPATKPQPVND
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgcccttgtagat
ggacagcggctgtacgatttggatatcgaaagcccgggtcatgagcagaaaaaagcgaac
atttacaaaggcaaaatcacccgtattgaaccaagtcttgaagcagcgtttgttgactac
ggcgcagaacgacatggtttccttcctcttaaagaaatcgcccgcgaatacttccctaac
agctattcctcccatggccgccccaacatcaaagatgtgctgcgcgaaggccaggaagtg
attgtacaggttgataaagaagagcgcggcaacaaaggcgccgccctgaccacctttatc
agcctggccggcagctatctggtgctgatgccgaacaacccgcgcgccggcggcatttcc
cgccgtatcgagggcgacgaccgcaccgaactgaaagaagcgctctcctcgctgcaactg
cctgacggcatgggcctgatcgtccgcaccgccggcgtcggcaaatccgccgaagcgctg
cagtgggacctgtcgttccgcctcaagcattgggaagccatcaagaaagccgccgaaggc
cgccctgcgccgttcctgattcaccaggaaagcaacgttatcgtgcgcgccttccgcgat
tacctgcgtcctgatatcggcgaaatcctgatcgataacccgaaaattctcgatctggcg
aaagagcacatcgccgcgctgggccgtccggacttcagcagcaaaattaaaatgtacagc
ggcgaaatcccgctgttcagccactaccagattgagtcgcagatcgaatccgccttccag
cgtgaagtgcgcctgccttccggcggctccatcgttattgacactaccgaagcgctgacc
gcgatcgacatcaactccgcacgtgccacccgcggcggcgacatcgaagagaccgcgttc
aacaccaacctggaagcggcggatgaaattgcccgtcagctgcgcctgcgcgacctcggc
ggcctgatcgtcatcgactttatcgatatgacgccggtgcgccaccagcgcgaggtggaa
aaccgcctgcgtgatgcggtgcgtcaggaccgtgcacgcattcagatcggtcgtatttcc
cgcttcggcctgctggagatgtcccgccagcgcctcagcccgtcgctgggcgaatccagc
caccacgtctgcccgcgctgtaacggcaccggcaccgtgcgcgacaacgaatcgctggcg
ctgtccatcctgcgtctgattgaagaagaagcgctgaaggaaaacaccaaagaagttcac
gccatcgtgccggtgcaggtcgcctcttacctgctgaacgaaaagcgtgaatccgtcagc
gccattgaaaaacgccaggccggcgtgaaagccgtgatcgtgccgaacgatcagatgcaa
acgccgcattactcggtactgcgcgtgcgcaaaggcgaagaaacgtcaaccctgagctat
ctgctgccgaagctgcatgaagaagagatggtgcagccgctggaagaaacgccgatggag
cgcaagcgtcctgagcaaccggcactggcctccttctctctcggcgccgacgcaccgccg
ccggcggctgaatccgccccggtgaaaaaaccggccgccaaccagccggccgcgccggca
gccgccgcagcacctggcctgctgagccgcttcttcagcggtctgaaatcgctgttcgcc
ggtgaagaaccacagccggcagtcgaggaaaaaccagctgaaaccgcgaagagcagcagc
ggcgaaaaccgccgccaggatcgtcgcagccaacgtcgtcagggttccggccgtaaagaa
cgcggcgagcgtggtgaacgtagcgagcgcaatgagcgcggcgagcgtaaagaacgcagc
gagcgtaaagaacgcggcgaaggccgtgagcgtgacaaccgcgaaggacgcgaccgcgat
aaccgcgagtcgcgtgacgagcagcgccgcaaccgtcgtaacgccgcgaataacgcgccg
gcgggcgccgatgcgcccgttattgatgaagccgctaaagcgcagcgcgaagagcaacag
cagcagcgccgcgagcagcgcgccgagcgtcagcgtcgtcgtcaggaagagaagcgtcag
gcgcagcaagaagtgcagcagctggagaaagccgcagtcgaaccggtagcggccgctgaa
gaggataaggaagaccgccatcagcagccggcgcagcgtcgtcaacgccgccagctgtcg
cagaaggtgcgtatcctgtccgcggaagaagagctgcagcgtgcagcggaagaactgtta
gcgccaaaagcgccggcggcaaccgctgaggaaagcaaagcgccagcggcagacgacagc
gtcaagctgctgccggaaaccgtcgccgtaaccggcgaagaagaagcgcaggaaaaccgt
aacggtgaaaacggcatgccgcgtcgctcacgtcgttcaccgcgccatctgcgcgtgagc
ggtcagcgccgccgtcgttaccgcgacgagcgttacccaacccagtcgccgatgccgctg
gcggcagcctttgcttcgccggaaatggcctctggcaaggtatggatcggttaccctgtc
acaacagctgcgcaaccggttgaagagacagaagttaaatcgccatccgccgacatcgtt
gagcagccggcagcggaaaccgccgccagcgttgccgcgcctgtcatcgccgctgctcag
gatgaggttcaggcaccagccgctgctgcggccgccgccagcgtcgagccggaggaaagc
acgccagccgccgctctgccgcaggaagaggtcaaagcgcctcagccggcagccgtagaa
gcaccggccgacgtcgccagcgatgcagaacctgtcgctgaagccgtaccgtctcagcct
gaagaacagcctgctgcgcctgtcgccgttgcgccggcagccgacaacgctgctgctgaa
gaacaagcggtgacagaacaggccgttgaggaagcgaccattgcggcaccgaccgaagca
gtcgtcaccaaaccagctccgcagccggtaagcgatgagacggcggcaaccccggcgcca
gccatcgtggcccagccagcagagacgcgctataagcacatcgccagcgcgccgatgact
aaagcaccggcaccggcttaccagccggaagcgccgaagcacagcgactggcagcgcccg
gcgtttaatttcgacggcaaaggcagcgccggtggccactcggcagtaagccaggctacc
gccccggccaccaagccgcagccggttaacgactaa
DBGET
integrated database retrieval system
