Serratia sp. FGI94: D781_3556
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Entry
D781_3556 CDS
T02433
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
smaf
Serratia sp. FGI94
Pathway
smaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
D781_3556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smaf03400
]
D781_3556
Enzymes [BR:
smaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
D781_3556
DNA repair and recombination proteins [BR:
smaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D781_3556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
AAA_22
SH3_13
UvrD-helicase
SLFN-g3_helicase
PhoH
nSTAND3
UvrD_C
AAA_16
CbiA
AAA_28
T2SSE
MdcG_N
ABC_tran
FtsK_SpoIIIE
SRP54
MukB
TrwB_AAD_bind
MeaB
AAA
NTPase_1
Flavi_DEAD
ATPase
Motif
Other DBs
NCBI-ProteinID:
AGB83761
UniProt:
L0MM25
LinkDB
All DBs
Position
complement(3749157..3751022)
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AA seq
621 aa
AA seq
DB search
MMQLLQQAVALGVLRPLDVQFAQVVAGPERPDMLLAAACLSAEAGAGHVCLQLEQLLPET
LFGARQPELAQAVWQAAGQPDVEAWRALLLSSSAVSDGSLPTPLVLQQQRLYLQRMWQSE
GEVADFIGSDDTPQPIDPQRLRPILDRLFGEAEATPDWQKIAAAVAATRRIAVISGGPGT
GKTTTVAKLLAALVQLADGERLRIQLAAPTGKAAARLTESLGSASRRLGLTQQQLSLFPS
EAATLHRLLGAQPNSQRMRYHRGNPLHLDVLVVDEASMVDLPMMARLIAALPAHARVIFL
GDRDQLASVEAGAVLGDICRFAEQGYSEARAAQLSQLTGCALQGQPAQAAAAVRDSLCLL
RKSYRFDANSGIGQLAFAVNAGDVRGARAALDGRFGDVAGYPLAETADYQALLDACVAGY
RDYLTQVAAGVDAQQVLDAFGRFQVLCALREGPFGVSGLNERIETGLQRAGLIRRASGAA
GRWYRGRPVMIGRNDSALGLFNGDIGIALPDAAGELRVHFQLPDGSIKSVQPSRLPAHET
AYAMTVHKSQGSEFDHTVLVLPNHYLPVLTRELVYTAITRARQRLSLYAADKVLMSAIRT
PTQRRSGLAERLLLASDEQGR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagctactacaacaggcggtcgcgcttggcgtgttgcgtccgttggacgtgcag
ttcgcccaggtggtcgccgggccggaacggccggatatgttgctggcggcggcctgcctc
agcgcggaagccggtgccggccacgtctgtctgcagctggagcaactgctgccggagaca
ttattcggcgcccgccagcctgagctggcgcaggcggtctggcaggccgccggtcagccg
gacgttgaggcgtggcgagccctgctgctgtcgtcatcggcggtcagcgacggcagcttg
ccgacgccgctggtgctgcagcagcagcgtctctacctgcagcgcatgtggcaaagcgaa
ggcgaggtggcggactttatcggcagtgacgatacgccacagcctatcgatccgcagcgt
ttacggccgatcctggatcgcctgtttggcgaggcggaagcgacgccggactggcagaaa
atcgccgccgccgttgccgctacgcggcgcattgcggtgatttccggcgggccgggcacc
ggcaaaaccaccacggtggcgaaactgctggcggcgctggtgcagctggccgatggtgaa
cggctgcgcattcagctcgccgcgccgaccgggaaagcggcggcgcgcctgaccgaatcg
ctcggcagcgccagccgccggctggggctgacgcagcagcagctgagcctgtttccttcc
gaagccgccacgctgcaccgcctgctgggcgcgcagccgaacagccagcgcatgcgttac
catcgcggtaacccgctgcatctggacgtgctggtggtggatgaggcgtcgatggtggat
ttaccgatgatggcgcggctgatcgccgccttgcccgcacatgccagagtgattttcctt
ggcgaccgcgatcagctggcctcggtggaggcgggcgcggtgctgggggatatttgccgc
tttgccgagcagggctacagcgaggcgcgtgcggcgcagctcagccagctgaccggctgt
gcgctgcaggggcagccggcgcaggcggctgcggcggtgcgcgatagcctgtgtttgctg
cgtaaaagctaccgttttgacgccaactcgggcattggacagctggcgttcgcggttaac
gccggcgatgtccggggcgcgcgtgcggcgctggacgggcgttttggcgacgtggccggc
tatccgctggcggagacggcggactatcaggcgctgctggatgcctgcgtggcgggctat
cgcgattacctgacgcaggtggccgccggcgttgatgcgcagcaggtgctggatgcattc
ggacgttttcaggtgctgtgcgccctgcgggaaggaccgttcggcgtcagcgggctgaat
gaacgcattgaaaccggcctgcagcgcgccggattgatccggcgtgcgtccggcgccgcg
gggcgttggtatcgggggcgtccggtgatgatcggccgcaacgacagcgcgctggggctg
tttaacggcgatatcggcattgccttgccggatgcggcaggggaattgcgcgttcacttt
caactgccggacggcagcatcaaatcggtgcagccaagccgcttaccggcgcatgaaacc
gcctatgcgatgacggtgcacaagtcgcagggatcggagtttgaccatacggtgctggtg
ctgcccaaccattatctgccggtgctgacgcgggaactggtgtataccgccattacccgc
gcgcgtcagcggctgtcgctgtacgctgccgataaggttttgatgagcgccatacgtacg
ccgacgcagcgccgcagcgggctggccgaacgcctgctgctggcgagcgatgaacagggg
cgctaa
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