Sphingopyxis macrogoltabida EY-1: AN936_12345
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Entry
AN936_12345 CDS
T04104
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smag
Sphingopyxis macrogoltabida EY-1
Pathway
smag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AN936_12345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smag03021
]
AN936_12345
03400 DNA repair and recombination proteins [BR:
smag03400
]
AN936_12345
Enzymes [BR:
smag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AN936_12345
Transcription machinery [BR:
smag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AN936_12345
DNA repair and recombination proteins [BR:
smag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AN936_12345
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
BSH_YknX
RPOC_hybrid
YqfD
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ALH81128
UniProt:
A0A0N9UY45
LinkDB
All DBs
Position
complement(2589400..2593683)
Genome browser
AA seq
1427 aa
AA seq
DB search
MNQLTNFMNPVAKPETFDMIKIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYIVLEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAIRVLLENLDLEQERVDLMEELATTKSELKPKKIIKRLKVVESFIESGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSLEREGEPGEGMLLADMAEVHQALFT
GAVTLHTKVISRVPQTDEQGNEYLKRFETTPGRMLIGECLPKSHTVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKETVLFADAIMALGFRNAFKAGISFGKDDMIIPASKEGMVDETRALV
KDFEQQYQDGLITQQEKYNKAIDAWSQCGDKVANAMMDEIRATPKLEDGRMAPINSIYMM
AHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVVIEEDCGTERGMEMRAIIQGGSTIASLGERILGRTTL
EDVADKDGNIIAPIGTLLDEATTQRIEDAEVQSVKIRSPLVCEATLGVCGKCYGRDLARG
TPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNEQSNAEAISDGTIEYRDMATIV
DQRGRRLALSRSGEIAIIDSEGRERATHKLPYGAQIMHKDGEKVKKGDRIAEWDPFTMPL
ITEKQGVVKYQDLADGKTLVEQVDEATGIAQRVVIEYRSAGRAKKEDLQPRLTLLDDASG
EAARYLLAVGTMLSVEDGQEVQAGDVLARVSREASKTRDITGGLPRVAELFEARIPKDNS
VIAKISGRIEFVKDYKAKRKIAIVPEEGDPIEYLIPKSKVLEVQEGDMVKRGDALISGSP
NPHDILDVMGVEALAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITSGGDTTLL
PGEQLDYLEMMEYNAKLPKNGVPAEGRPVLLGITKASLQTRSFVSAASFQETTRVLTEAS
VQGKIDSLQGLKENVIVGRLIPAGTGAAMNRVRVTASSKDAALRAAMRAANQEHLIAPAA
AAEEHAAELAQGPEAAIGDDPLGKVQGEDFTTDDVMVEERPEGEGEE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagcttaccaacttcatgaacccggtcgcgaagcccgaaaccttcgacatgatc
aagatcggcatcgcgagccccgagcgcatccgctcgtggtcgttcggcgagatcaagaag
cccgaaacgatcaattaccgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
attttcggtccgatcaaggattatgagtgcctgtgcggcaagtacaagcgtatgaaatat
aagggcatcgtctgcgagaagtgcggtgtcgaagtcacggtgaccaaggtccgccgcgag
cgcatgggccatatcgagctcgccgcgcctgtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctgaagcagctcgagcgcgtgctgtat
ttcgaagcctatatcgttctcgagcccggcctgaccccgctcgagaagttccagctgctg
accgaagacgaactgctcgacgcgcaggatgaatatggcgaagacgctttctcggcgggt
atcggcgccgaggcgatccgcgtgctcctcgaaaatctcgatctggagcaggaacgcgtc
gacctgatggaagagctcgcgacgaccaagtcggagctgaagcccaagaagatcatcaag
cggcttaaagtggtcgagagcttcatcgaatcgggcaaccgccccgagtggatgatcctc
gaagtcgtgccggtcattccgcccgaactgcgcccgctggtgccgctcgacggcggccgc
tttgctacaagcgaccttaacgacctttaccgtcgcgtgatcaaccgcaacaatcgtttg
aagcgcctgatggagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagccgtcgacgcgctgttcgacaacggccgccgcggccgcacgatcaccggtgcc
aacaagcgtccgctgaagtcgctgtcggacatgctcaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggtccc
gaactcaagctgcatcagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctatgcgcgcctcgacgccaagggtctgtcgatgaccctgaagcaggcgaagaag
tgggtcgaaaaggaacgcaaggaagtctgggacatcctcgacgaagtcattcgcgagcac
ccggtcctgctgaaccgcgccccgacgcttcaccgcctcggcatccaggcgttcgagccc
gtgctgatcgaaggcaaggcgatccagcttcacccgctggtctgcgccgcgttcaacgcc
gacttcgacggtgaccagatggcggtccacgtgccgctgtcgctggaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctcagccccgcgaacggcaagccgatc
atcgttccgtcgcaggacatggtcctcggtctctactatctctcgctggaacgcgaaggc
gaaccgggagagggcatgctgctcgccgacatggccgaagtgcatcaggcgctgtttacc
ggcgcggtgacgttgcacaccaaggtgatcagccgcgttccgcagaccgacgagcagggc
aatgagtatctgaagcggttcgagaccaccccgggccgcatgctgatcggcgaatgcctg
ccgaagtcgcacaccgtgcccttcgacgtcgtcaaccgccttctgaccaagaaggaaatc
ggcgacgtgatcgatcaggtctatcgccacaccggccagaaagagacggtgctgttcgcc
gacgccatcatggcgctgggcttccgcaacgcgttcaaggcgggcatctcgttcggcaag
gatgacatgatcatcccggcgtcgaaggaagggatggtcgacgaaacccgcgcgctggtg
aaggatttcgagcagcagtatcaggacggcctgatcacgcagcaagaaaagtacaataag
gccattgatgcgtggtcgcagtgcggcgacaaggtcgccaacgcgatgatggacgaaatc
cgcgcgacgccgaagctggaagacggccgcatggccccgatcaactccatctatatgatg
gcgcattcgggtgcccgtggttcgcaggcccagatgaagcagctcgccggcatgcgcggc
cttatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggcctgaccgttctcgagtatttcaactcgacgcacggtgcgcgtaagggtctggccgat
acggcgctcaagacggcgaactcgggttacctgacacgccgtctcgtcgacgtgtcgcag
gactgcgtcgtcatcgaggaagattgcggcaccgaacgcggcatggaaatgcgcgcgatc
atccagggcggttcgacgattgcctcgctcggcgagcgtatcctcggccgcaccacgctc
gaagatgtcgccgacaaggacggtaacatcatcgcgccgatcggcacgctgctcgacgaa
gcgacgacgcagcggatcgaggacgccgaagtccagtcggtgaagatccgttcgccgctg
gtctgtgaagcgacgctgggtgtttgcggcaaatgctatggccgcgaccttgcccgcggt
acgccggtgaatatcggcgaagcggtcggcgtcatcgccgcgcagtcgatcggtgagccc
ggcacgcagctgaccatgcgtacgttccacatcggcggtgcggcgcaggtcaacgagcag
tcgaacgccgaagcgatttcggacggtacgatcgaatatcgcgacatggcgacgatcgtc
gaccagcgcggccgccgtctggcgctgtcgcgttcgggcgagatcgcgatcatcgacagc
gaaggccgcgaacgcgcgacccacaagctgccctatggtgcgcagatcatgcacaaggac
ggcgagaaggtgaagaagggcgaccggattgccgaatgggatccgttcaccatgccgctg
atcaccgaaaaacagggcgtcgtgaagtatcaggatcttgccgacggcaagacgctggtc
gaacaggtcgacgaagcgacgggcatcgcccagcgcgtcgtgatcgaatatcgctcggcg
ggccgcgccaagaaggaagacctgcagccgcgcctgaccttgctcgacgacgcgtcgggc
gaagccgcacgctacctgctcgcggtcggcacgatgctgtcggtcgaggacggtcaggaa
gtgcaggcaggcgacgttctggcgcgtgtcagccgcgaagcgtcgaagacgcgcgacatc
accggcggtctgccgcgtgttgccgagctgttcgaagcgcgcattccgaaggacaacagc
gttatcgcgaagatcagcggccgcattgaattcgtcaaggattacaaggcgaagcgcaag
atcgcgatcgttccggaagaaggcgatccgatcgagtatctgatccccaagtcgaaggtg
ctggaagtgcaggaaggcgacatggtcaagcgcggcgacgcgctgatcagcggttcgccg
aacccgcacgacattctcgacgtcatgggcgtcgaggcgctggccgaatatctggtcgcg
gaaatccaggaagtctatcgactgcagggcgtgaagatcaacgacaagcacatcgaggtg
atcgttcgccagatgctgcagaaggtcgagatcacgtcgggcggcgacaccacgctgctg
ccgggcgaacaactcgattatctggagatgatggaatataacgccaagctgccgaagaac
ggcgttcccgcggagggccgtccggtcctgctcgggatcaccaaagcgtcgctgcagacc
cgcagcttcgtttcggccgcatccttccaggaaacgacccgcgttctcaccgaggcttcg
gtgcagggcaagatcgactcgctgcagggcctcaaggaaaatgtcatcgtcggtcgcctc
atcccggcgggtaccggcgctgccatgaaccgcgtccgcgtcaccgcctcgtcgaaggat
gccgcgcttcgcgccgccatgcgcgccgcgaaccaggagcatctgatcgcgccggcggcc
gccgccgaggaacatgccgccgaactggcgcagggccccgaagcggcgatcggcgacgat
ccgctgggcaaggtgcagggcgaggacttcacgaccgacgacgtgatggtcgaagaacgt
cccgaaggcgaaggcgaggaataa
DBGET
integrated database retrieval system
