Sphingopyxis macrogoltabida EY-1: AN936_17450
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Entry
AN936_17450 CDS
T04104
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
smag
Sphingopyxis macrogoltabida EY-1
Pathway
smag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AN936_17450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smag03019
]
AN936_17450
03016 Transfer RNA biogenesis [BR:
smag03016
]
AN936_17450
Enzymes [BR:
smag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AN936_17450
Messenger RNA biogenesis [BR:
smag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AN936_17450
Transfer RNA biogenesis [BR:
smag03016
]
Prokaryotic type
tRNA degradation factors
AN936_17450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
BioW
OB_RRP5_4th
KH-I_KHDC4-BBP
DUF3016
Motif
Other DBs
NCBI-ProteinID:
ALH82078
UniProt:
A0A0N9UEE1
LinkDB
All DBs
Position
complement(3696811..3699132)
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AA seq
773 aa
AA seq
DB search
MFDVKKVSIEWGGETLTLETGKVARQADGAVMATLGETVVLCAVTAAKSVKDGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSY
DGHNEPDILAMVAASAALTISGVPFMGPIGAARVGYVDGEYILNPTDAQVAEGDLDLVVA
ATYDAVMMVESEANELSEEVMLGAVLFAHDACKEVVKAIVKLAEQAAKDPWEVAAGDDNA
AIKDKLKKLIGKDIAAAYKLTDKSARSNALNEARAKAKAQFAEDGLSPQEVMAGIKLTKK
LEAEIVRGAILKDGKRIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATATLGTK
ESEQMVDGLNGLSYQNFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKD
EFPYTIRLTSDITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYAILS
DILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITREIFEAALNQAKEGRAHILGEMNK
ALGETRSELSAHAPRIETMQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIKISS
SDLDQIEAARKWISGIVEEAEVGKIYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERV
EKVSDVLAEGQEVKVKVLEIDQRGKVRLSMRVVDQETGEELEDTRPAREPREPRGDRGPR
RDGDRGDRGPRGGGGRDRGPRRDGGDRGTRGEGRRERNDGPEDQGHVPDFLKD
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgtgaaaaaagtatcgatcgagtggggcggtgaaacgctgacgctcgaaacg
ggtaaggttgcccgtcaggccgacggcgccgtgatggcgacgctgggcgaaacggtcgtt
ttgtgcgccgtgaccgccgcgaagtcggtgaaggacgggcaggatttcttcccgctcacc
gtccactatcaggaaaaatattcggccgccggccgcatcccgggcggcttcttcaagcgc
gaacgcggcgcgaccgaaaaggaaacgctcgtcagccgcctgatcgaccgtccgatccgt
ccgctgttccccgaaggtttctacaacgaaatcaatgccattgctcaggttctgagctat
gacggccacaacgagcccgacatcctcgcgatggtcgcggcgtcggccgcgctcaccatc
tcgggcgtgcccttcatgggcccgatcggcgctgcgcgcgtcggctatgtcgacggcgaa
tatatcctgaacccgaccgatgcgcaggttgccgagggcgacctcgacctcgtcgtcgcc
gccacttacgacgcggtgatgatggtcgaatccgaagccaatgagctgtcggaagaggtc
atgctcggcgccgtgctgttcgcgcacgacgcgtgcaaggaagtcgtcaaggcgatcgtc
aagctcgccgaacaggctgccaaggatccgtgggaagtcgccgccggcgacgacaatgcc
gcgatcaaggacaagctgaagaagctgatcggcaaggacatcgccgccgcctacaagctg
accgacaagtcggcccgctcgaacgcgctcaacgaagcgcgcgcgaaggcgaaggcacag
ttcgccgaagacggcctcagcccgcaggaagtcatggccggcatcaagctgaccaagaag
ctcgaagccgaaatcgttcgcggcgccatcctgaaggacggcaagcgcatcgacggccgc
acgacgacccagatccgtccgatcgtcgccgaaacgcacttcctgccccgcgcgcacggc
tcggcgctgttcacccgcggtgaaacgcagaccattgcgaccgcgacgctcggcaccaag
gaaagcgaacagatggtcgatggcctcaacgggctgtcgtaccagaacttcatgctgcac
tataacttcccgccctattcggtcggtgaagtcggccgcttcggcgcgccgggccgccgc
gaagtcggtcatggcaagctggcatggcgtgcgctgcaccccgtgctgccgacgaaggac
gaattcccctatacgatccgcctcaccagcgacatcaccgagtcgaacggctcgtcgtcg
atggcgtcggtctgcggcggcagccttgcgatgatggacgccggcgtgccgatcaagcgt
cccgtctcgggcatcgcgatgggcctgatcctcgaaggcaaggattatgcgatcctcagc
gacatcctcggcgacgaggatcacctcggcgacatggacttcaaggtggccggcacgtcc
gaaggcatcaccacgatgcagatggacatcaagatcgcgggcatcacgcgcgagatcttc
gaagccgcgctgaaccaggccaaggaaggccgcgcgcacatcctcggtgagatgaacaag
gcgctcggcgaaacccgcagcgaattgtcggcgcacgcgccgcgcatcgagacgatgcag
atcgacaagtcaaagatccgcgacgtcatcggtaccggcggcaaggtgatccgcgagatc
gtcgcgaccaccggcgccaaggtcgacatcgacgacgaaggcctgatcaagatctcgtcg
agcgacctcgaccagatcgaagcagcccgcaagtggatcagcggcatcgtcgaggaagcc
gaagtcggcaagatctatgacggcaaggtcgtcaacctcgtcgatttcggtgcgttcgtg
aatttcatgggcggcaaggacggtctcgtccacgtcagcgaaatcaagaacgaacgcgtc
gagaaggtctcggacgtcctcgccgaaggtcaggaagtcaaggtcaaggtgctcgagatc
gaccagcgcggcaaggtccgcctgtcgatgcgcgtcgtcgatcaggaaaccggcgaagag
ttggaagacacccgcccggcgcgcgaaccccgcgaaccgcgcggcgatcgtggtccgcgc
cgcgacggcgaccgcggtgaccgtggtccgcgtggcggcggtggccgcgatcgcggtccg
cgccgcgacggcggcgaccgtggcacccgaggcgaagggcgccgcgagcgcaacgacggt
ccggaagatcagggccatgtgcccgatttcctgaaggactaa
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