Sphingopyxis macrogoltabida EY-1: AN936_20225
Help
Entry
AN936_20225 CDS
T04104
Name
(GenBank) Fis family transcriptional regulator
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
smag
Sphingopyxis macrogoltabida EY-1
Brite
KEGG Orthology (KO) [BR:
smag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smag03016
]
AN936_20225
Enzymes [BR:
smag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AN936_20225
Transfer RNA biogenesis [BR:
smag03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AN936_20225
Prokaryotic type
tRNA splicing ligases
AN936_20225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ALH82596
UniProt:
A0A0N9VE06
LinkDB
All DBs
Position
complement(4319111..4320337)
Genome browser
AA seq
408 aa
AA seq
DB search
MTQTTFEVMNVEGGRPVKMWTRGVPVEDMARAQLTKAAKMPFVFKHVAAMPDVHVGIGAT
VGSVIPTKGAVIPAAVGVDIGCGMMAARTTLMAHDLPDNLEGIRSAIEAAVPHGRSVGRG
KRDSGSWGDPSAAIIDAWATLAERFGRIVAKHPRLKNTNNLTHLGTLGTGNHFIELCLDQ
DARVWVMLHSGSRGVGNAIGTYFIDLAKQDMRKWFINLPDEDLAYFPEGTDHFDDYVEAV
GWAQDFAALNRRLMMANVIAALRLQIAKPFEAEAEAVNCHHNYVTRENHFGENVLVTRKG
AVRAAKGTMGIIPGSMGAKSFIVRGLGNAESFDSCSHGAGRVMSRTAAKKLVTLDEHIAD
TAGVECRKDEGVIDETPKAYKPIEAVMAAQADLVEIVHTLKQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagacgacctttgaagtgatgaatgtcgagggcggacgccctgtcaagatgtgg
acgcgcggcgttcccgtcgaggatatggcgcgtgcgcagctgaccaaggcggcgaaaatg
ccgttcgtgttcaagcatgtcgccgcgatgcccgacgtccatgtcgggatcggcgcgacc
gtcggatcggtgatcccgaccaagggcgcagtgatcccggccgccgtcggcgtcgacatc
ggctgcggcatgatggccgcgcgcacgacgctgatggcgcacgatctgcccgacaatctg
gagggcatccgcagcgcgatcgaggcggcggtgccgcacggacgttcggttggccgtggc
aagcgcgacagcggctcgtggggcgacccgtcggccgcgatcatcgacgcctgggcgacg
ctcgccgaacgcttcggacgcatcgtcgccaagcatccgcggctgaagaacaccaacaac
ctgacgcatctggggacgctcggaacgggcaaccatttcatcgagctgtgcctcgatcag
gatgcgcgggtttgggtgatgctgcattcgggttcgcgcggcgtcggcaatgcgatcggc
acctatttcatcgacctcgcgaagcaggacatgcgcaaatggttcatcaatctgcccgac
gaagacctcgcctatttcccggaagggaccgaccatttcgacgattatgtcgaggcggtg
ggctgggcgcaggactttgcggcgctgaaccggcgcttgatgatggcaaacgtcatcgcg
gcgctgcggctccagatcgccaagcccttcgaggccgaggccgaagcggtgaactgccat
cacaattatgtgacgcgcgagaatcacttcggcgagaatgtgctcgtcacccgcaagggg
gcggtgcgtgcggcgaaggggacgatggggatcatcccgggttcgatgggcgcgaaatcg
ttcatcgtgcgcgggctgggcaacgccgaaagcttcgatagctgtagccatggcgccggc
cgcgtcatgagccgcaccgcggcgaaaaagctcgtcactctcgatgagcatatcgccgac
accgcgggcgtcgaatgccgcaaggacgaaggcgtcatcgacgagacgccgaaggcgtac
aagccgatcgaggcggtgatggcggcgcaggccgacctcgtcgagatcgtccacacgctg
aagcaggtggtgtgcgtgaaggggtga
DBGET
integrated database retrieval system
