Shewanella maritima: EXU30_03300
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Entry
EXU30_03300 CDS
T06365
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smai
Shewanella maritima
Pathway
smai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXU30_03300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smai03019
]
EXU30_03300
Enzymes [BR:
smai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EXU30_03300
Messenger RNA biogenesis [BR:
smai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EXU30_03300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBF81829
UniProt:
A0A411PE42
LinkDB
All DBs
Position
complement(764358..765761)
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AA seq
467 aa
AA seq
DB search
MSFQSLPLSPTILKAIEEVGYQQPTPVQQRVIPVAVDGQDVLASAETGTGKTAAFALSTL
QQLEVNDVAQQTELSHGRAVRVLVMTPTRELAIQIQQCFSDYGKHLPYRSLAVYGGASIN
PQRKALAQGIDILVATPGRLFDIVGQYQLDLSQVVHLVIDEADRMLDMGFVKDIEKVRRL
VNLQHQTMMFSATYSQAVEQLAKNMLEQPALVNIKSEATTKQITHKAFKLDKRRKAELLS
ELIGKYNWQQSMVFVSSKESAEFLVSELKLDGISAAVFHGDKTQGARNRALDEFKAGKIR
ALVATDLAARGIDIEALPRVINFELPEELEDFVHRVGRTGRAGLSGEAMTFFSEQEKSKF
AEIEALIEQTIPVVIPKGYEPGAPMPARYRELNLDSSAVGKRASGKSSSGKNGKFKGTKH
THGKKGKFASGNKTNRSGSAASNGKSGAASKGKSKPSRQGKYASNKG
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttcaatctttgcctttatcgccaaccatcttaaaagccattgaagaagtgggt
taccagcagcccacgccagtacagcagcgcgttattcctgttgctgttgacggacaagat
gtgttggcaagcgctgaaactggcacgggtaaaaccgctgcatttgcgttgtcgactctg
cagcagcttgaagtgaacgatgttgcccagcaaactgagctaagtcatggccgagccgtg
cgggtgttggtgatgacgccaacccgtgagttagcgattcaaattcagcagtgctttagt
gattatggcaagcatcttccttatcgctcactggcagtttatggtggtgcgagtattaac
ccgcagcgcaaagcattagcgcaaggcattgatattttggtggcaacccctggacgctta
ttcgacattgttggtcaatatcagttagatctatcgcaagtggtgcatctggttattgat
gaagcagaccgtatgttagacatgggctttgttaaagatatcgaaaaggtgcgccgttta
gtcaacctgcagcatcaaaccatgatgttttcggcgacttattctcaagcggtggagcag
cttgccaagaatatgcttgaacaacccgccttagtgaacattaaaagtgaagcgaccact
aaacaaattactcataaggcatttaagcttgataaacgtcgtaaagctgagttgttgtct
gagctaattggtaaatacaattggcagcaatcgatggtttttgtcagcagtaaagagtcg
gcagagtttttagtgtctgagctaaaacttgatggtatcagcgccgctgtgtttcatggt
gataaaactcagggtgcacgcaatcgcgcattagatgaatttaaagcaggcaaaattcgg
gcacttgttgccactgatttagctgcccgcggcatcgatattgaagcgctgccaagggtg
attaactttgaattgcctgaagagctagaagactttgttcaccgcgtaggtcgcaccggt
cgcgcaggcttatcaggtgaagccatgacttttttcagtgaacaagaaaaatctaaattt
gctgaaattgaagctttaatagaacaaactattccggttgttattccaaaaggctatgag
cctggcgcgcctatgcctgcaaggtatcgtgaattaaatttagatagcagtgctgtaggt
aaaagggcgagcggtaaaagttcatcgggtaagaacggtaagtttaaaggtactaaacac
acgcacggcaaaaaaggcaagtttgcttcaggtaataaaacaaatcgctctggtagcgca
gctagtaatggtaaaagtggcgcagctagcaaaggaaaaagtaagcctagtcgtcaaggc
aaatacgcatctaacaaaggctag
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