Shewanella maritima: EXU30_06185
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Entry
EXU30_06185 CDS
T06365
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
smai
Shewanella maritima
Pathway
smai03030
DNA replication
smai03430
Mismatch repair
smai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EXU30_06185 (holA)
03430 Mismatch repair
EXU30_06185 (holA)
03440 Homologous recombination
EXU30_06185 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smai03032
]
EXU30_06185 (holA)
03400 DNA repair and recombination proteins [BR:
smai03400
]
EXU30_06185 (holA)
Enzymes [BR:
smai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EXU30_06185 (holA)
DNA replication proteins [BR:
smai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
EXU30_06185 (holA)
DNA repair and recombination proteins [BR:
smai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
EXU30_06185 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
KaiA_N
DUF4388
Motif
Other DBs
NCBI-ProteinID:
QBF82328
UniProt:
A0A411PFQ9
LinkDB
All DBs
Position
1445678..1446706
Genome browser
AA seq
342 aa
AA seq
DB search
MRVYPDQLKHQLSPLPNVIMLFGDDPWLVDNSKQQVLQAARKQGFEERIQLTQETGFSWN
DLIQEWQSMSLFASRRVIELTLPNAKPGTDGASAFQTIMADNNPDVLLILQGPKLSAETK
SKWFKTLDAKGVYVPCTTPEGKQFERWLDGRIKHYQLIIHHDAKAMMFSLFEGNLLAAEQ
AMQMLQLLSPNADISAQQLQDYFEDQSRFSVFQLTDALLLNQQKKAQHILAQLQGEGTAM
PILMWSLFKEINLLMTLKLAMAQGEPLAQLYGKHRIWDKRKPLYQSALSRLELDHIEHML
AFTSKLELNLKQHGIEDWVGTSHLCLLFDPRAHNRLAHIELS
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtttatccagatcaactaaaacaccaattatcgcccctaccaaacgtcatcatg
ctgtttggtgatgatccttggctcgtggataacagcaagcaacaagtgctgcaagccgcc
cgcaaacaaggctttgaagagcgaattcaacttacccaagaaactggctttagctggaac
gacctgatccaagagtggcaatcaatgagcttgtttgccagccgccgcgtgatagagcta
accctaccgaatgccaaacctggcacagatggcgcgagcgcatttcaaactatcatggca
gacaacaacccagatgtgttgctcattttacaaggtccaaaactgtcagctgaaaccaaa
agtaaatggtttaaaaccctcgatgccaaaggcgtgtatgtaccttgcaccacaccagag
ggtaaacaatttgagcgttggttagatggccgcatcaaacattaccagctgatcattcat
catgacgccaaagccatgatgtttagtttgtttgaaggcaacttgctcgccgccgagcaa
gcaatgcaaatgctgcaactgcttagcccaaatgcagatattagcgcccaacaactgcaa
gattactttgaagatcaatcacgctttagcgtattccagctaactgatgctttgttattg
aaccagcaaaagaaagcgcagcacatactggcacagttgcagggagaaggcactgctatg
ccaatcctaatgtggtcactgtttaaagagataaatttgctgatgaccctcaagcttgcc
atggcgcaaggtgagccactcgctcagctatatggtaagcatcgcatttgggacaaacgc
aaacctttataccaatcagcccttagccgtttagagcttgatcatatcgagcacatgctc
gcctttacctctaaattagagctcaatctcaaacagcatggtattgaagactgggttggc
accagtcacttatgtttgttgttcgacccgcgcgcccataaccgtctggcccacatagag
ctaagttag
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