Shewanella maritima: EXU30_08675
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Entry
EXU30_08675 CDS
T06365
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smai
Shewanella maritima
Pathway
smai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXU30_08675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smai03019
]
EXU30_08675
03009 Ribosome biogenesis [BR:
smai03009
]
EXU30_08675
Enzymes [BR:
smai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EXU30_08675
Messenger RNA biogenesis [BR:
smai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EXU30_08675
Ribosome biogenesis [BR:
smai03009
]
Prokaryotic type
rRNA helicases
EXU30_08675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBF82755
UniProt:
A0A411PGT2
LinkDB
All DBs
Position
2040944..2042791
Genome browser
AA seq
615 aa
AA seq
DB search
MSSDERTFRDLGLSENLLRALDELGYEKPTPIQAASIDPLMEGRDILGQAQTGTGKTGAF
ALPLLNSVDQKLNAPQILVLAPTRELAVQVAEAFGSYAKHMKGFHVLPIYGGQSMHQQLS
ALRRGPQVVVGTPGRVMDHMRRGTLKLDALQALVLDEADEMLKMGFIDDIEWVLDHKPAE
SQLALFSATMPEQIKRVANKHLNNPAQISIAASHTTVDSIEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILI
ATDVAARGLDVERIGHVVNYDIPYDSEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATNSRISPMKIPSPETVAERRLSRLGEQIQETIAGDLDFMKTAVADLCTQLEIDTDLL
AAALLQQVQQERPLQLPPIQERNRDNRDDRNRDRGGRERGGRPTPTSFGKADGLKDSPDV
KMNRYVIDVGRDNGVGVGNIVGAIANEANIESRFIGQIQLFDQVTTVDLPDGMPKDVLAH
LKKVRVCGRPLNIRDAEGESFPEQRQRRHRGDRNDRRPRGDRQDRRPRGDRNDRGGERND
RGERRQRRPRDNGNS
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgatgaaagaactttccgcgatctcggtctttccgagaatttgcttcgtgcc
cttgacgaattaggctacgaaaaaccaacgccaattcaggctgcgagtatcgacccttta
atggaaggtcgcgatattctaggtcaagcgcaaacgggtacgggtaaaaccggtgcgttc
gccctgccactgcttaacagtgtcgatcaaaaattaaatgcgccacaaattcttgtgtta
gcaccaactcgtgagcttgccgtccaggtagctgaagcgtttggtagctatgcgaaacac
atgaaaggcttccacgtactgcctatttacggcggtcaaagcatgcaccagcaattaagc
gcacttcgccgtggtccacaagttgttgtgggtacaccaggtcgcgttatggatcacatg
cgccgtggcaccctaaaactagatgcactacaagcactagtattagacgaagccgacgaa
atgctaaaaatgggcttcattgacgacatcgagtgggtacttgatcacaagccagctgaa
agccaattagcactattctcagcaactatgcctgagcaaattaagcgtgttgccaacaag
caccttaataaccctgcacaaatctctattgccgctagccacactacggttgactcaatc
gaacaacgttttgtacaggtttcacagcacaacaaacttgaagcgttagtacgtgttcta
gaagtagaaaacactgaaggtatcatcatcttcgtacgtactcgtaacagctgtgttgag
ctagcagaaaaactagaagcccgtggttatgcatcttcaccactacacggtgacatgaac
cagcaagcccgtgagcgcgcggttgagcagctaaaacgcggcaagctagacattctaatt
gcaactgacgttgcagcacgtggtcttgacgttgaacgtattggccacgttgtaaactac
gatattccatacgattctgaagcttacgttcaccgtattggtcgtacaggtcgtgctggc
cgtactggtatggcgattctgttcgttactcatcgtgaaatgcgcatgctacgcactatt
gagcgtgcaactaacagccgcatctcaccgatgaagatcccaagcccagagacagtagca
gagcgccgtctatctcgtcttggtgagcaaattcaagaaaccatcgccggtgacttagat
ttcatgaagacagcggttgcagatctttgtactcagcttgagatcgacactgacctactt
gctgcagcattactgcaacaggttcagcaagagcgtcctctacagttacctccaattcaa
gagcgtaaccgtgacaaccgtgatgatcgtaaccgtgaccgtggtggtcgtgagcgcggc
ggtcgtccaacaccaactagctttggtaaagcagatggtctaaaagacagcccagacgtg
aagatgaaccgttacgtgatcgacgtaggtcgtgataacggtgtaggcgttggtaacatt
gttggcgcaatcgctaacgaagcgaacatcgaaagccgcttcattggtcaaatccagtta
ttcgaccaagtgactactgttgacctaccagacggtatgccaaaagacgtattagcacac
cttaagaaggttcgcgtatgtggtcgtccactcaacatccgtgacgctgaaggcgagtca
ttcccagagcaacgtcaacgccgtcaccgtggtgatcgcaatgaccgtcgtccacgtggt
gaccgtcaagaccgtcgtccacgcggcgatcgtaatgaccgtggtggcgagcgcaatgat
cgcggcgagcgtcgtcaacgtcgtccacgcgacaacggcaatagctaa
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