Shewanella maritima: EXU30_11120
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Entry
EXU30_11120 CDS
T06365
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
smai
Shewanella maritima
Pathway
smai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EXU30_11120 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smai03021
]
EXU30_11120 (rpoB)
03400 DNA repair and recombination proteins [BR:
smai03400
]
EXU30_11120 (rpoB)
Enzymes [BR:
smai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EXU30_11120 (rpoB)
Transcription machinery [BR:
smai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EXU30_11120 (rpoB)
DNA repair and recombination proteins [BR:
smai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EXU30_11120 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QBF83182
UniProt:
A0A411PIF3
LinkDB
All DBs
Position
2600995..2605026
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPKVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIK
SFSGYSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLFDREAAAGTVKDIKEQ
EVYMGDIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERTEFKIKKDSLVMK
LVPDRLRGETSSFDIKDSEGNTLVEAGRRVTARHIRQLEKTNTTDLEVPVEYIVGKFAAQ
DYIDEDTGEVLVSANAEITLEDLAKLSLAGIKAVDTLFINDLDHGAYIADTLRIDSTTNR
LEALVEIYRMMRPGEPPTKEAAESLFQNLFFSDERYDLSKVGRMKFNRRLEMAEDEGEGI
LSKEDIVAVMKKIIDIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVVDGVI
TDEVEYLSAIEEGRYVIAQANIEVDKNGRMVEEQIACRHKGESTFMRAADIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLSAEKPLVGTGIERALAVDSGVVVAAK
RGGVIDYVDASRIVVKVNEDELTPGEAGIDIYNLTKYTRSNQNTCINQRPRCFVGEPVVR
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRALEIEEMHVSQARKD
LGEEFKILEEGVLDRARNLLLSAGFSEAKLAEIPRKDVLIQVIDDEAKQTELEQLAEQHE
ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
CPIEDMPYDETGNPVDIVLNPLGVPSRMNIGQVLEVHMGAAAKGIGNRITEMLEEQRELA
ELRGYIKEVYELGDEVQQKVDIDSFSDDEVVRLAKHLKSGLPIATPAFDGAKEKEIKQML
ELAGLPSSGQLRLFDGRTGNEFEREVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM
PESFNVLLKEIRSLGINIELDQE
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgcaaagactttggtaagcgtcctaaa
gttctggacatcccttacctactgtctatccagttagactcttttaagaagttcaccgat
caagaccctacgggtgaacgtggcttagaagccgcattccgtagcgtttttcctatcaag
agcttttctggctatagtgagctgcaatatgtcagctacaagctaggtgagccagttttt
gatgtgaaagaatgtcagatccgcggtgttacctattcagcgccattacgcgtaaaacta
cgcatggtactgtttgaccgtgaagctgctgctggtactgtaaaagatatcaaagagcaa
gaagtctatatgggtgacatcccattaatgactgaaaatggtactttcgttatcaatggt
actgaacgtgtaattgtttctcagttacaccgtagtccgggtgtattcttcgatcacgac
cgtggtaaaacccactcttcaggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcatggttggatttcgaattcgatccaaaagatgcattattcgtacgtattgaccgt
cgtcgtaaactacctgcgactatcattctgcgcgcattggaatactcgactcaagaaatt
ctagacttattcttcgaacgcactgagttcaagattaagaaagactcattagtgatgaag
ctagttcctgatcgcctacgtggtgaaacttctagctttgacattaaagattctgaaggc
aatacgctagttgaagcgggtcgccgtgttactgcacgtcacattcgccagctagagaaa
actaacacaacagatcttgaagtaccagttgagtacatcgttggtaagtttgctgcgcaa
gattacatcgacgaagatactggtgaagtattagtttcagcaaatgccgaaatcacttta
gaagacctagctaagctttcattagcaggcatcaaagccgttgacactctgtttatcaat
gaccttgatcacggtgcttacattgctgacaccctacgtatcgattcaacaactaaccgc
ctagaagcgctagttgaaatctatcgtatgatgcgccctggtgagccaccaaccaaggaa
gcggcagaaagcttattccaaaacctattcttcagcgacgagcgttatgacctatctaaa
gtaggtcgtatgaagttcaaccgtcgtctagaaatggctgaagatgaaggcgaaggcatt
ctgtctaaagaagacatcgttgcggtaatgaagaaaatcattgatattcgcaatggtttc
gacgaagtcgatgatatcgaccaccttggtaaccgtcgtattcgctctgtgggcgaaatg
gcagaaaaccaattccgcgttggtctagttcgtgttgagcgtgctgttcgtgagcgtcta
tctttaggcgacctaaacgagctaatgccacaagacctaattaacgctaagccaatttct
gcggcagtgaaagaattcttcggctcttcacagctgtctcagttcatggaccaaaataac
ccgctatcagaagtgacgcacaagcgtcgtatttctgcattaggcccaggtggtttgact
cgtgaacgtgctggcttcgaagtacgtgacgtacacccgactcactatggtcgtctatgt
ccgattgaaacacctgaaggtccaaacattggtttgatcaactctttggcaagtttcgca
cgtactaactcatacggtttcctagaaacaccttaccgcaaagtggtagacggtgtgatc
actgacgaagtggaatacttgtcagcgattgaagaaggtcgttatgttattgcacaggca
aacattgaagttgataagaacggccgcatggttgaagagcagattgcatgtcgtcacaaa
ggtgaatctacctttatgcgcgcagctgacattcaatacatggacgtttcgccacaacag
attatttctgttgctgcttcattgattccgttcctagaacacgatgacgcgaaccgtgca
ttgatgggtgcgaacatgcaacgtcaggctgtaccaacactaagcgctgaaaagccatta
gtcggtacgggtattgagcgtgcattggctgttgactcaggcgtagttgttgctgctaaa
cgtggcggtgtaatcgactatgttgatgctagccgcatcgtagttaaagtaaatgaagac
gagcttactccaggtgaagcgggtatcgacatttacaacctaactaagtacacccgttcg
aaccaaaacacttgtatcaaccaacgtccacgttgtttcgttggtgagccagtggttcgt
ggtgacgtactagctgacggtccttcaactgacttaggtgatttggcacttggccaaaac
atgcgtatcgcattcatgccttggaacggttacaactttgaggattcgatccttatttct
gagcgcgtagcgcaagaagaccgtttcacgactattcacatccaagagctgtcatgtatt
gcacgtgatactaaacttggtagtgaagaaatcacagctgatattccaaacgtaggtgag
tctgctctgtctaaactagacgagtcaggtatcgtttacattggtgcagaagtgaaaggt
ggcgatattctagtaggtaaagtgacacctaaaggtgaaactcagcttactccagaagag
aagttacttcgtgctatcttcggtgaaaaagcgtctgacgttaaagacagctcgctacgt
gtacctaactcagtaaaaggtaccatcatcgacgttcaagtcttcacccgtgacggtgtt
gaaaaagacaagcgcgcactagaaattgaagaaatgcacgtaagccaagctcgtaaagac
ttaggcgaagagttcaagatccttgaagaaggtgtcttagaccgtgcacgtaacttgtta
ctgtctgctggtttctctgaagcaaaacttgctgagatcccacgtaaagacgtgttaatc
caagttattgacgacgaagcgaaacaaactgaacttgagcagttagctgagcagcacgaa
gagctaaaagctgactttgataagaagtttgaaatcaagcgtcgtaagatcactcaaggt
gatgacttagcacctggcgtactgaagattgttaaggtttacctagcagttaaacgtact
atccaacctggtgataagatggctggtcgtcacggtaacaaaggtgttatctcgaagatc
tgtcctattgaagatatgccatacgatgaaactggtaacccagtagacatcgtcctgaac
ccgctgggtgtaccatcgcgtatgaacatcggtcaggtacttgaagttcacatgggcgca
gctgctaaaggcattggtaaccgtattaccgaaatgcttgaagagcaacgcgaacttgct
gagctacgtggctatatcaaagaagtttatgagttaggtgatgaagttcaacagaaagtt
gacatcgactcattctctgatgatgaagttgtacgtcttgccaaacacctgaaatctggt
ctgccaatcgcaacaccagcattcgacggtgctaaagagaaagagatcaagcaaatgctt
gaacttgcaggcttaccatcttcaggccagcttcgtttattcgatggccgcactggtaac
gaatttgagcgtgaagtaactgttggttacatgtacatgcttaaactgaaccacttagtt
gatgacaagatgcacgcccgttctaccggttcgtacagcttggttactcagcagcctctg
ggcggtaaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcacttgaa
gcatacggtgccgcttatactcttcaagaaatgcttacagttaagtcggatgacgttaac
ggtcgtactcagatgtataagaacatcgtcgacggtaaccatcagatgcaacctggcatg
ccagagtccttcaacgtattgctgaaggagatccgttcactgggtattaatatcgagttg
gatcaagagtaa
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