Shewanella maritima: EXU30_11280
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Entry
EXU30_11280 CDS
T06365
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
smai
Shewanella maritima
Pathway
smai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EXU30_11280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smai03021
]
EXU30_11280
03400 DNA repair and recombination proteins [BR:
smai03400
]
EXU30_11280
Enzymes [BR:
smai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EXU30_11280
Transcription machinery [BR:
smai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EXU30_11280
DNA repair and recombination proteins [BR:
smai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EXU30_11280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
QBF83214
UniProt:
A0A411PIC4
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All DBs
Position
2626489..2627478
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AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVNSTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDILEILLNLKGLAVTIEGKDEALLTLSKSGAGPVTAADITHDGD
VAVMNPDHVICHLTGNHDISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDASFSPVA
RIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVTEQP
PEEVKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLADDL
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttcttaaaccgcgtctcgttgatattgagcaggttaat
tcaacacgcgctaaagttacactagagccattagaacgtggttttggccataccttaggt
aacgcgttgcgtcgcatcctattatcatcaatgccaggctgtgctgtcacagaggtggaa
attgatggtgtgctgcacgaatacagcagcaaggaaggcgtgcaagaagatatccttgaa
atactactaaaccttaaaggtttagcagtaacaattgagggtaaagatgaagctttactt
accctaagtaagtcaggcgcaggccctgttacagcagcagatattactcatgacggcgat
gtagctgttatgaatccggatcatgttatctgtcatttgactggtaatcatgacattagc
atgcgtattcgcgttgagcgtggtcgcggttatgttccagcttcggctcgtgcacaaact
gaagacgatgatcgcccaatcggtcgcttgctagtagacgcttctttctcaccagtagct
cgcattgcttacaatgtagaagctgctcgtgttgaacagcgcactgacttagataaactc
gttatcgatatgacaaccaatggtactatcgatcctgaggaagctatccgtcgctcagca
actatcctagctgaacagctagatgcgtttgttgaactacgtgatgtgactgagcagccg
ccagaagaagttaaaccggagtttgacccaattctgttgcgtcctgtcgacgatttagag
ctaaccgtacgttcggctaactgtttgaaagccgaagcgattcattacatcggagatcta
gtacagcgcactgaagttgagctgcttaagactcctaacttaggtaagaagtctcttact
gaaattaaggatgtgttagcgtctcgcggactgtcgttaggtatgcgtctagaaaactgg
ccaccggctagtttagcagacgacctataa
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