Shewanella maritima: EXU30_17690
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Entry
EXU30_17690 CDS
T06365
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
smai
Shewanella maritima
Brite
KEGG Orthology (KO) [BR:
smai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smai03019
]
EXU30_17690 (hrpA)
Enzymes [BR:
smai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EXU30_17690 (hrpA)
Messenger RNA biogenesis [BR:
smai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EXU30_17690 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
T2SSE
PhoH
nSTAND3
SLFN-g3_helicase
AAA_30
HA2_N
NACHT
ResIII
Motif
Other DBs
NCBI-ProteinID:
QBF84301
UniProt:
A0A411PLC4
LinkDB
All DBs
Position
4175290..4179177
Genome browser
AA seq
1295 aa
AA seq
DB search
MTSGLHPLSKTFLNQCFQLDAANIRRRLFRLKKQQEKQPDEQKKVQETAKLEELAQKAFE
KAKLRLENRPQISYPDALPVSQKRDEIAEAIANNQVTIVAGETGSGKTTQLPKICLELGL
GSRGMIGHTQPRRLAARSVANRVAEELNSPLGEVVGFKVRFADALNEDSYIKLMTDGILL
AELTSDKYLNQYDTIIIDEAHERSLNIDFILGYLKQVLKKRPDLKVIITSATIDVDRFSK
HFNNAPVIEVSGRTFPVETRYRPLVKDNEADLDVTDGIFAAVDELMAEGPGDILIFMNGE
REIRDTADMLRKQQYRDTEILPLYARLSYGEQSKVFKSHVGRRIVLATNVAETSLTVPGI
RYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRQGRCGRVGPGICIRLYDEQDFLSR
PQFTDPEILRTNLASVILQMLAIGLGDIGAFPFIQPPEQKHIRDGFLLLEELQAVKKRKA
DLVLTPLGRNLSKIPLDPRLARMVIEANELGCLHETLVVTSGLSIQDPRERPIDKKQAAD
ECHRRFNDKDSDFSSWLLLWDHIKDSKRELSASQFRKRCRDEYLAYLRVREWQDLYTQTR
QAVHDLKWKLNDNAADYESLHKAILSGLLSHIGFKDNNNEYLGARNRRFFVFPGSPLAKK
GPKWIMAAELTETSRLFARCCAKIQPEWLEELAPHLVKKSYAEPHYEAKPASVVAFESQV
LYGLRIVNRRKVQYGPIEPVEAREIFIRSALAEGELQTKEAFFVKNQKLRSDIEDLEHKS
RRRDILVDDQVLVDFYEPLVPQGIYNAPLFFKWWKQAKRKTPELLDFNIELLMKRDADHI
SALDFPDVWHKGNLGLKVSYNFEPGHDDDGVSVHIPVGLLNQVDTDDFDWLVPGLREEKL
TALIKSLPKNLRRNFVPAPDYAKACFQAMKPFELPMLESMCKQLLRMSGTRINVEDFDLT
QLPTHLTINFKVEDDRGRLVKQSRDLDTLKDSLQGVVAKAIRKVADSGIEQQNIKEWSFG
NLPSLYQKRKGNYEVKAFPALVDNKDDVSIKLFDDEHEAMRHHRVGLRRLLLINIPSPVK
HLQQALPNKAKLAMYFNPFGQVQFLIEDIINAAVQQLLDEKQLDVRDAEQFDKAKDWVRA
ELNPTAEKIALNVEQVLTVYNRIKKRLKGKISFEIAFAMSDIQTQLDKLVYKGFVADCGW
QRVADIHRYLQAIENRLDKLPVDPTRDRLHAQSVAKVQDALEATLAKVPKSQPVPQALVE
ARWMIEEYRVSCFAQVLGTAYPISEKRVMNHINSI
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
ttgacttctggtcttcatcctctttctaaaactttcctcaaccaatgtttccagcttgat
gccgctaacatcaggcgtcgtttgtttcgtctgaaaaagcagcaagaaaaacaaccagac
gagcaaaaaaaggtacaagaaacagctaagttagaagagctagcgcaaaaggcatttgaa
aaggctaagctgcgtttagaaaaccgtccgcaaattagttacccagacgcgctgccagtc
tcgcaaaagcgtgatgaaattgccgaggccattgccaataatcaggtcaccattgttgcg
ggtgaaacaggctcgggtaaaactactcagctacctaaaatctgtttagaacttggttta
ggctcgcgcggtatgattggtcatactcagccgcgtcgccttgccgcgagaagcgtagct
aaccgcgttgctgaagagctaaatagtccgctaggtgaagtggttggctttaaagttcga
tttgccgacgcgcttaatgaagacagctacatcaagttgatgactgatggtattttgctg
gccgagctaacctcagataaatacctgaaccaatacgacactattattatcgatgaggcc
cacgagcgtagccttaacatcgactttattcttggttatttaaaacaagtactgaaaaaa
cgcccagatttaaaggttatcattacctcggcgaccattgatgttgatagattttcaaag
catttcaacaatgcgccagtgattgaagtatcaggccgtactttccccgttgaaacccgt
tatcgcccactggtaaaagataacgaagccgaccttgatgtaaccgacggcatttttgca
gctgttgatgagctaatggctgaaggtccgggcgatattcttatctttatgaatggtgag
cgcgaaattcgcgacactgccgatatgctgcgtaaacagcagtatcgtgatactgaaatt
ctgccactttatgcacgtttatcttatggcgagcagtccaaggtgtttaagtctcatgtt
ggtcggcgcattgtacttgcgaccaacgtggctgaaacctcgttaactgtgccgggtatt
cgctacgtaattgacccaggtaccgcgcgcattagtcgttatagctaccggactaaagtg
cagcgcctgccaattgagccagtttcacaagccagtgctaatcagcgtcaaggtcgttgt
ggtcgtgttggcccaggtatttgtattcgcctatatgacgagcaagattttctaagccgc
cctcaatttaccgacccagaaattctgcgtaccaatctcgcgtccgttatcttgcagatg
ttggcgattgggctgggcgatattggcgcattcccatttattcagccgccagagcaaaag
catattcgtgacggttttttgttgcttgaagagctgcaagcggtgaaaaagcgcaaagcc
gatctagtgctgacgccacttggtcgtaacttatctaaaatcccgctcgacccgcgtctt
gcgcgcatggtgattgaggcgaatgagcttggctgtttacacgaaaccttagttgtgacc
tcgggtttgtcgattcaagatccacgtgagcgacccattgataaaaaacaagctgctgac
gaatgccatcgccgcttcaatgacaaagactctgattttagcagttggttattgctgtgg
gatcatattaaagactctaagcgtgagttatcagcaagccaatttagaaagcgttgccgc
gatgaatacttagcctatttgcgcgtacgtgaatggcaagacttatatactcaaacgcgc
caagcagtgcatgacttaaagtggaagttaaacgacaacgccgcagattatgagtcgctg
cataaagcgattttgtctggcctgctcagccacatcggttttaaagacaataacaacgaa
taccttggggcgcgtaatcgccgcttctttgtgttcccaggctcgccgctagccaaaaaa
ggtcctaagtggattatggccgccgagcttaccgaaacctcgcgcttatttgctcgctgc
tgcgctaaaattcagccagagtggcttgaagagcttgcgccgcatctagtgaaaaagagt
tacgcagagccacattatgaggcaaaacctgccagtgtggtcgcatttgagtcgcaggtg
ctttatggtctgagaatagtgaatcgtcgtaaggtgcaatatggcccaattgagccagtt
gaagcccgtgaaatctttattcgcagtgcgctagctgagggtgaactacaaaccaaagaa
gcgtttttcgttaaaaaccaaaagctgcgcagcgatattgaagacttagagcacaagtcg
cgccgccgcgatattttggtagacgatcaagtgctggtggacttttatgagccgctagtt
cctcaaggtatttacaatgcaccgctgttctttaagtggtggaaacaagctaagcgtaaa
accccagagctgcttgattttaatatcgagctgctgatgaagcgcgatgccgaccatatc
tcagcgctggacttcccagacgtgtggcacaagggcaaccttgggcttaaagtaagctac
aactttgagccagggcacgacgatgatggcgtgtcggttcatattccagtgggtttgctc
aatcaggttgataccgatgattttgattggttggtgccggggctgcgggaagagaaactc
accgcattaattaagtcgctgccaaagaatctacgccgtaattttgtgcctgcacccgac
tacgctaaagcgtgttttcaggcgatgaaaccatttgaactgcccatgcttgagtctatg
tgtaagcaacttttacgcatgtcgggtacccgcatcaatgtggaagattttgatttaact
cagctgccaacccacttaaccattaactttaaggttgaagatgaccgcggccgtttggtt
aaacaaagtcgtgacttagacaccttaaaagattcgctgcaaggcgtggtggcaaaggct
attcgtaaggtggcagatagcggtattgagcagcaaaacatcaaagagtggagctttggc
aacctgcctagcctgtaccaaaagcgcaaaggcaactatgaagtgaaggccttcccagcg
ctggtggataataaagatgatgttagcattaaactgtttgacgacgagcacgaagctatg
cgtcatcaccgcgtgggcttgcgccgcctgctgctgattaatattccatctccagtgaag
cacctgcagcaagcgctgccgaataaagccaaactggcaatgtactttaacccgtttggt
caggtgcagtttttaattgaagacattattaacgccgcagtgcagcaattgttggatgaa
aaacagcttgatgtgcgtgatgctgagcagttcgataaagccaaagattgggtgagggca
gagcttaacccaaccgcagagaaaattgccttgaatgttgagcaagtgctcacggtatac
aaccgcattaaaaagcgcctaaaaggtaagattagctttgaaatcgcctttgccatgagc
gacatacaaactcagctcgataagttggtgtataaagggtttgtagctgattgtggctgg
cagcgagtggcagatattcatcgctacctccaagcgattgagaaccgccttgataagctg
ccggttgatccaactcgtgatcgcctgcacgcccaaagtgtcgccaaagtacaagatgca
ctggaggctacgctagcaaaagtacccaagtcgcaacctgtgccgcaggcattagttgaa
gcacgctggatgattgaagaataccgtgtatcttgctttgcccaagttttaggtacggct
tatccaatatcagaaaagcgggtgatgaatcatattaattctatttaa
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