Shewanella maritima: EXU30_18905
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Entry
EXU30_18905 CDS
T06365
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
smai
Shewanella maritima
Brite
KEGG Orthology (KO) [BR:
smai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smai03016
]
EXU30_18905 (rnd)
Enzymes [BR:
smai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
EXU30_18905 (rnd)
Transfer RNA biogenesis [BR:
smai03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EXU30_18905 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Tube
Myc-LZ
Motif
Other DBs
NCBI-ProteinID:
QBF84502
UniProt:
A0A411PLV1
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All DBs
Position
4450036..4451163
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AA seq
375 aa
AA seq
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MEYLVLTFEYIETDEQLSELVAQYQQSPLLVIDTEFVRTRTYYANLGLIQAYDGKTLALI
DPVAVSDLSCFWQLLTDESIVKLVHSCSEDLEVFAHYGKCQPKPLFDSQIAASMGNMGYG
LGYAKLVQQCLDVEIDKGESRTDWMKRPLTDAQLQYAANDVFYLYKLYPQLKQKLEQMGR
SEWLFEEGERITQGRLDAPDPETAYFKVKNAFQLTPKQLACLKVLAAWRQQKALSRNLAL
GFVIKDHALIALAKKQPQSVTALNKLVDLTDHEKRFHGKELVKLITTVDFSDLPEQIDVI
ALRPGYKSTFKQIKNTLVELCEHKQVATEFIASKRLIHGFMLWLFNNKQGETPLLLSGWR
GEVVGSAIDDVSFSG
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atggagtatttagtgttaacttttgagtatattgaaaccgatgaacagctgagtgagctt
gtggctcagtatcagcaatctccattgctagtcatcgatactgagtttgtgcgcactcgc
acttactatgcaaatctagggcttattcaagcttatgatggtaaaaccctcgcgcttatc
gaccctgttgctgttagcgatttatcatgtttttggcagctgctgacggatgaaagcatc
gttaaattggtgcattcatgcagtgaagatctagaagtgtttgcccattatggaaagtgc
caacctaagccactgtttgacagccaaatcgccgccagcatgggtaatatgggttatgga
cttggttacgctaagctagtgcagcagtgcctagatgtggaaattgataaaggcgaatcg
cgcaccgattggatgaagcgcccgttaaccgatgctcagttgcaatacgctgccaacgat
gtgttctacctttataaactgtatccacagctaaaacaaaagcttgagcagatgggacgc
agtgaatggttatttgaagaaggtgagcgcattacccaagggcgtttagatgcgccggat
ccagaaaccgcttactttaaagttaagaatgcctttcagttaacgcctaagcagctggct
tgtttaaaagtgcttgcggcatggcgccagcagaaagccttgagccgcaatttagcactg
ggttttgtcattaaagatcatgccttaatagctttggctaaaaagcagccgcaaagcgtt
actgccctcaacaagttagttgaccttactgatcacgaaaagcgttttcatggtaaagag
ctggtcaaactcattaccactgtcgactttagtgacttgcctgagcagatagatgtcatt
gcgctgcgcccaggttataagtctacctttaagcagatcaaaaatactctggtcgagctg
tgtgagcacaagcaagtggcaactgagtttattgcgtctaaacgccttattcatgggttt
atgctgtggctatttaacaataaacaaggtgaaacgccgctgttattgtcaggctggcgt
ggtgaagtggtaggctcggcgattgatgatgtgagtttttctggctga
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