Streptomyces malaysiensis: SMALA_2404
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Entry
SMALA_2404 CDS
T05189
Name
(GenBank) pectate lyase A
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
smal
Streptomyces malaysiensis
Pathway
smal00040
Pentose and glucuronate interconversions
smal01100
Metabolic pathways
smal02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
smal00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
SMALA_2404
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SMALA_2404
Enzymes [BR:
smal01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
SMALA_2404
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-ProteinID:
ATL82638
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Position
complement(3082496..3083644)
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AA seq
382 aa
AA seq
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MRSTHDHGTTDGFGDVPGVIRATSLTSTINATSETDALGISVAARRRRRLTAVAAGVTAA
LALGGLSTVSAHGADPADSAGSNSTRATATRPAAETTPIGFGAGTTGGGNATATTVTSLD
AFKTAVTGDKAKVVRVSGLISLTGQVDIGSNTTVLGVGSGSGFTGGGLRLKESTNVIVRN
LDISKPRKPSDGITVQKSTKVWIDHNTFSADREHDKDYYDGLLDINHGSDNITVSWNKFA
DHFKGSLVGHSDNNASEDTGHLKVTYHHNWFTNVYSRIPSLRFGTGHFYDNYVQGAETGV
HSRMGAQTLVENNVFRDTEVAVTTSRDSDVDGYAVLRGNDLGGAATEISRTGGFTTPPYA
YTAEPASSVVATVTAQSGAGRL
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcgacgcacgatcacggcaccacggacggcttcggcgatgtccccggagtcatc
cgcgcgaccagcctgaccagcacgatcaacgccaccagcgagaccgacgccctcggcata
tccgtcgccgcccgccgccgacgccgactgaccgcggtcgccgcgggcgtcaccgcggcg
ctcgcgctcggcggcctctccacggtctccgcccatggcgcggacccggccgactccgca
ggctccaacagcacacgcgccaccgccacccgccccgccgccgagaccacccccatcggc
ttcggcgccggcaccacgggcggcgggaacgccaccgccaccaccgtgacctccctggac
gccttcaagaccgccgtcacgggcgacaaggccaaggtggtcagggtctccgggctgatc
tccctcaccggacaggtggacatcggctccaacaccaccgtgctgggcgtgggttcgggc
tccggtttcaccggcggcggactgcggctgaaggagtcgacgaacgtcatcgtccgcaac
ctcgacatcagcaagccccggaagccgtccgacggcatcaccgtgcagaagtcgacaaag
gtgtggatcgaccacaacaccttctcggccgaccgcgagcacgacaaggactactacgac
ggtctgctggacatcaaccacggctcggacaacatcaccgtctcctggaacaagttcgcc
gaccacttcaagggcagcctggtcggccacagcgacaacaacgcgagcgaggacaccggg
cacctcaaggtgacgtaccaccacaactggttcaccaatgtgtactcccgcatccccagc
ctgcgcttcggcaccggacacttctacgacaactacgtccagggcgcggaaaccggagtg
cactcccggatgggcgcgcagacgctggtcgagaacaacgtcttccgcgacaccgaggtg
gccgtcaccaccagccgggacagcgatgtcgacggctatgcggtgctgcgcggcaacgac
ctgggcggggcggccaccgagatctcccggacgggcggcttcaccaccccgccgtacgcg
tacacggcggaaccggcgtcctcggtcgtggcgaccgtcaccgcccagtcgggcgcgggc
aggctctga
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