Streptomyces malaysiensis subsp. malaysiensis DSM 4137: SMALA_4317
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Entry
SMALA_4317 CDS
T05189
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
smal
Streptomyces malaysiensis subsp. malaysiensis DSM 4137
Brite
KEGG Orthology (KO) [BR:
smal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smal03016
]
SMALA_4317
Enzymes [BR:
smal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SMALA_4317
Transfer RNA biogenesis [BR:
smal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SMALA_4317
Prokaryotic type
tRNA splicing ligases
SMALA_4317
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ATL84550
UniProt:
A0A291SUN4
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All DBs
Position
5438556..5439749
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AA seq
397 aa
AA seq
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MSYVEVPGARVPIRMWTDPSTVEGVAMEQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVKTSLTADDLPGDLSRLRSKIEQTIPVGRGMHDDPVDPG
RLHAFPTGGWDDFWSRFGGVAEAVKFRQERAVKQMGSLGSGNHFIEFCLDDEGSVWLMLH
SGSRNIGKELAEYHIGEARKLPHNQDLVDRDLAVFIADTPQMAAYRHDLFWAQEYAKYNR
AIMMALFQDVVRKEFKKARPVFEPVISCHHNYVAEERYEHMDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVRGLGNEASFNSASHGAGRKMSRNAAKKRFSTRDLEEQTRGVECRKDSG
VVDEIPGAYKPIEKVIDQQRDLVEVVARLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtcgaggtgcccggcgctcgggtgccgatccggatgtggaccgacccttcg
acggtcgagggcgtggccatggagcagctgcgcaatgtggccacgctgccctggatcaag
ggcctcgccgtgatgccggatgtgcattacgggaagggtgccacggtcggctcggtgatc
gcgatgcagggcgcggtgtgcccggccgcggtgggtgtggacatcggctgcgggatgtcg
gcggtcaagacgtcgctgaccgcggacgaccttccgggggatctctcgcggctgcggtcc
aagatcgagcagacgatcccggtggggcgcggaatgcacgacgacccggtggacccgggg
cggctgcacgcgtttcccaccgggggctgggacgacttctggagccggttcgggggagtg
gccgaagcagtcaagttccgccaggagcgggccgtcaagcagatgggttcgctcgggtcc
ggcaaccacttcatcgagttctgcctcgatgacgagggttcggtctggctgatgctgcac
tccggctcccgcaacatcggcaaggagctggccgagtaccacatcggcgaggcccggaag
ctgccgcacaaccaggatctggtcgaccgcgacctggccgtcttcatcgcggacaccccg
cagatggcggcgtaccggcacgatctgttctgggcgcaggagtacgcgaagtacaaccgc
gcgatcatgatggcgctcttccaggacgtggtgcgcaaggagttcaagaaggcccgcccg
gtcttcgagccggtgatcagttgccaccacaactacgtcgccgaggagcgctacgagcac
atggaccttctcgtgacccgtaagggcgccatccgcgccggcagcggggactacgggatc
atcccgggctcgatgggcaccggttcgtacatcgtgcgcggcctggggaacgaggcgtcg
ttcaactcggcctcgcacggcgcgggccggaagatgagccgtaacgcggcgaagaagcgc
ttctcgacccgggatctggaggagcagacgcggggcgtggagtgccgtaaggactccggc
gtcgtcgacgagatccccggggcgtacaagccgatcgagaaggtcatcgaccagcagcgg
gacctcgtcgaggtggtggcgaggctcaagcaggtcgtgtgtgtgaagggctga
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