Streptomyces malaysiensis subsp. malaysiensis DSM 4137: SMALA_5669
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Entry
SMALA_5669 CDS
T05189
Name
(GenBank) metallo-beta-lactamase family hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
smal
Streptomyces malaysiensis subsp. malaysiensis DSM 4137
Pathway
smal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMALA_5669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smal03019
]
SMALA_5669
Messenger RNA biogenesis [BR:
smal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SMALA_5669
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ATL85899
UniProt:
A0A291SYF1
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Position
6963880..6965565
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AA seq
561 aa
AA seq
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MSHPHPELGPPPRLPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGV
DLILPDFTSIRDRLDDIDGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVEEGHRERIGPFECEFVAVNHSIPDALAVAIRTPAGMAVHTGDFKMDQLP
LDGRLTDLPAFAKLGEEGIDLLLVDSTNAEVPGFVPPERDISGVLRQVFGNAQKRIIVAS
FASHVHRIQQILDAAHEYGRKVAFVGRSMVRNMGIARDLGYLRVPAGLVVDVKTLDDLPD
DQVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GATVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPKN
RCVIAEDGVVVDLVDGIAKIVGKVQAGYVYVDGLSVGDVTETSLKDRRILGEEGIISIFV
VVDSTTGKIVGGPHIQARGSGIEDAAFSAVIPKIEDAMAKSASDGVVDPHQLQQLARRAI
GKWVSDSYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgagctcggccctccgccgaggcttcccgaaggcggtctgcgc
gtcaccccgctcggcggcctcggtgagatcggccggaacatgacggtcttcgaatacggt
ggccggctgctgatcgtcgactgcggggtgctcttccccgaggaggagcagcccggagtc
gacctgatcctgccggacttcacatccatccgggaccgtctcgacgacatcgacggcatc
gtcctcacccacgggcacgaggaccatatcggcggcgttcccttcctgctgcgagaaaag
cccgacatcccgctgatcggctccaagctgaccctcgccctgatcgaggcgaagctccag
gagcaccggatccggccgtacaccctcgaggtcgaggaggggcaccgcgagcggatcggc
cccttcgagtgcgagttcgtggcggtcaaccactccatcccggacgccctcgcggtcgcc
atccgcaccccggccggtatggccgtgcacaccggcgacttcaagatggaccagctgccg
ctggacggccggctcacggatctgcccgccttcgccaagctgggcgaggagggcatcgat
ctgctgttggtggactccaccaacgccgaggtccccgggttcgtaccgcccgagcgcgat
atctccggagtgctgcgccaggtcttcggtaacgcgcagaagcgcatcatcgtcgccagc
ttcgccagccatgtgcaccgcatccagcagatcctcgacgcggcgcatgagtacgggcgc
aaggtggccttcgtcggccgctcgatggtccgcaacatgggcatcgcacgtgacctcggc
tatctgcgggtgccggccggtctcgtggtcgatgtgaagaccctcgacgaccttccggac
gaccaggtggtgctggtctgcacgggctcccagggcgagccgatggccgcgctgtcccgg
atggccaaccgcgatcaccagatccggatcgtccagggcgacacggtgatcctggcgtcg
tcgctgatccccggcaatgagaacgcggtctaccgggtcatcaacggactgacgcgatgg
ggcgccacggtcgtccacaagggcaacgccaaggtccatgtctccggccatgcctcggcc
ggtgagctgctgtacttctacaacatctgcaagccgaagaacctgatgccggtgcacggc
gaatggcgacatctgcgcgccaacgcggagctgggcgcgctgaccggggttccgaagaac
cgttgcgtcatcgcagaggacggtgtcgtggtcgacctggtcgacggcatcgccaagatc
gtgggcaaggtgcaggcgggatacgtgtacgtggacggcctctcggtcggcgatgtcacg
gagacctcgctcaaggaccgccgcatcctcggcgaggagggcatcatctcgatcttcgtg
gtcgtggacagcacgaccggcaagatcgtgggcggtccacatatccaggcgaggggctcc
gggatcgaggacgccgccttctccgcggtcatcccgaagatcgaggacgccatggccaag
tcggcctccgacggggtcgtggacccgcaccagctccagcagctggcgcgccgcgcgatc
ggcaagtgggtctccgacagttaccgccggcgcccgatgatccttcccgtggtcgtcgag
gtctga
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