Streptomyces malaysiensis DSM 4137: SMALA_5729
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Entry
SMALA_5729 CDS
T05189
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
smal
Streptomyces malaysiensis DSM 4137
Pathway
smal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMALA_5729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smal03019
]
SMALA_5729
03400 DNA repair and recombination proteins [BR:
smal03400
]
SMALA_5729
Enzymes [BR:
smal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SMALA_5729
Messenger RNA biogenesis [BR:
smal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SMALA_5729
DNA repair and recombination proteins [BR:
smal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SMALA_5729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
ATL85959
LinkDB
All DBs
Position
complement(7046855..7049020)
Genome browser
AA seq
721 aa
AA seq
DB search
MSDENLRTSADRVLARLVGDTTGSARLREDQWRAIEALVAERRRALVVQRTGWGKSAVYF
VATALLRERGSGPTVIVSPLLALMRNQVEAAARAGIHARTINSANTEEWDTIQAEVAAGE
VDVLLVSPERLNNPDFRDEVLPRLAAATGLLVVDEAHCISDWGHDFRPDYRRLRTMLADL
PQGVPVLATTATANARVTADVAEQLGTGEGTGRALVLRGPLDRESLRLGVLPLPDAAHRL
GWLADHLDDLPGSGIIYTLTVAAAEEVTAFLRQRGHTVASYTGKTENADRQQAEEDLLAN
RVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVEHAEVLLLPGREDE
AIWRYFASLAFPPEEQVRRTLDVLAASDRPVSLPALEPQVELRRSRLEIMLKVLDVDGAV
RRVRGGWTATGQPWAYDAERYAWVARQREAEQQAMREYATTADCRMEFLRRQLDDEKAAP
CGRCDNCAGARFTAEVSAASLDAARGELGRPGVEVEPRRMWPTGLPAVGVDLKGRIAAGE
QAAPGRALGRLSDIGWGNRLRPLLAPQSPDAPVPDDVAGAVVTVLADWAKGPGGWASGAP
DAPDRPVGVVTIASRTRPQLIRTLGERIATVGRLPLLGSVAYHDGEIDTRVPRTNSAQRL
RALHGALTVPPPLAAALAEAGGPVLLVDDMADTGWTLAVASRLLRRAGAAGVFPLVLAVQ
G
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaaaatctgcgtacctcggccgaccgcgtcctggcccgcctcgtcggggac
accaccggctccgcccggctccgggaggatcaatggcgggcgatcgaggcgctggtcgcc
gagcgccgccgggcactggtcgtgcagcgcacgggctggggcaagtcggcggtgtatttc
gtcgccaccgcgctgctgcgcgagcgcggcagcggtccgaccgtgatcgtctcccccctg
ctcgcgctgatgcgcaaccaggtcgaggccgccgcgcgcgccggtatccacgcccgcacc
atcaattccgccaacaccgaggagtgggacaccatccaggcggaggtcgccgcgggcgag
gtggatgtgctgctggtgagccccgagcggctgaacaaccccgacttccgcgacgaggtg
ctgccccggctggccgccgccaccggtctgctggtcgtggacgaggcgcactgcatctcc
gactggggccatgacttccggcccgactaccgcaggctgcgcaccatgctcgccgatctg
ccccagggcgtgcccgtgctcgccacgaccgcgaccgcgaacgcacgggtcacggccgat
gtggccgagcagttgggcaccggcgagggcacggggcgagcgctggtgctgcgcggcccg
ctggaccgggagagcctgcggctgggcgtgctgccgctgccggacgccgcgcatcggctc
ggctggctcgccgaccacctcgacgacctgccgggctccgggatcatctacaccctcacc
gtcgccgcggccgaggaggtgaccgcgtttctgcggcagcgcggccacaccgtggcctcc
tacaccggcaagacggagaacgcggatcgtcagcaggccgaggaggatctgctggccaac
cgggtcaaggcgctggtcgccacctccgcgctgggcatgggattcgacaagccggatctc
ggcttcgtggtgcatctcggttcaccgtcctcccccatcgcctactaccagcaggtcggg
cgcgccgggcgcggtgtggagcacgccgaggtgctgcttctgcccggccgcgaggacgag
gcgatctggcggtatttcgcctcgctcgctttcccgcccgaggagcaggtgcgccgcacc
ctcgatgtgctggcggcgtcggaccggccagtgtcgctgcccgcgctcgagccccaggtc
gagctgcggcgatcacgtctggagatcatgctcaaggtgctcgacgtggacggcgcggtg
cggcgtgtgcgcggcggctggacggccaccggtcagccctgggcgtacgacgcggagcgg
tatgcgtgggtggcacgccagcgggaggccgagcagcaggccatgcgggagtacgccacg
acggccgactgccggatggagttcctccggcggcagctggacgacgagaaggcggcgccg
tgcggccgttgtgacaactgcgcgggggctcggttcaccgccgaggtgtccgccgcctcg
ctggacgcggcgcgcggtgagctggggcggcccggtgtcgaggtggagccgcgccgtatg
tggccgaccgggctgcccgcggtgggcgtcgatctcaagggccgcatcgcggcgggtgag
caggccgctccgggccgggccctgggccgtctgtccgacatcggctggggaaaccggctg
cggccgctgctggccccgcagagcccggacgccccggtgcccgacgatgtggccggtgcg
gtggtgacggtgctcgccgactgggccaagggccccggcggctgggcctcgggcgcgccg
gacgccccggaccgcccggtgggcgtggtcacgatcgcctcgcgcacccgtccgcagttg
atccggacactgggcgaacggatcgccaccgtcggccggttgcccctgctcgggagcgtg
gcgtaccacgacggcgagatcgacacccgggtgccgcgcaccaacagcgcccagcggctg
cgggcgctgcatggcgcgctgaccgtgccgcccccgctggcggcggccctcgccgaggcg
ggtgggccggtgctgctggtggacgatatggcggacaccggctggaccttggccgtcgcc
tcccggctgctccgccgggccggggcggccggagtgtttccgctggtcctggccgtgcag
gggtag
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