Streptomyces malaysiensis DSM 4137: SMALA_7159
Help
Entry
SMALA_7159 CDS
T05189
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
smal
Streptomyces malaysiensis DSM 4137
Pathway
smal03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
smal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SMALA_7159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smal03400
]
SMALA_7159
Enzymes [BR:
smal01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SMALA_7159
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SMALA_7159
DNA repair and recombination proteins [BR:
smal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SMALA_7159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_IS1595
Zn_ribbon_TFIIB
Zn_ribbon_6
NFACT_N
Zn_ribbon_3
DZR_2
DZR
Zn_ribbon_8
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ATL87379
LinkDB
All DBs
Position
8807999..8808787
Genome browser
AA seq
262 aa
AA seq
DB search
MPELPDVEGFRRTLASCAQGRRVERAAVADAGVLHGVTAQRLKRDLKGRRFAAPRRHGKW
LIAPTDGPTVLLHFGMTGRLVCGPDSEPAGRFERVAFDLDDGHRLGFEDQRKLQGIWLAA
TDADIDRIIGDQGPDALSLSRAELDRLLAGRRGRVKATLTDQAVIAGLGNLLGDEILWRA
RIHPQRPVNSLTDTEHDRLHIAMRDVLRASVRAGRVPDDPDWLTGQRDDPDPHCPRCGHP
LRHGRIAGRTTLWCPHCQGEEA
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctaccggatgtcgaggggttccggcggacgctcgcctcctgtgcccagggc
cgccgcgtcgagcgggcggcggtggccgacgcgggggtgttgcacggggtgaccgcccag
cggctgaagcgcgacctcaagggccgccgcttcgccgcaccgcgccgccacggcaagtgg
ctgatcgcccccaccgacgggcccacggtcctgctgcatttcggcatgaccgggcggctg
gtgtgcgggccggactccgaaccggccggccggttcgagcgcgtcgccttcgacctcgac
gacggccaccgcctcggcttcgaggaccagcgcaaactccagggcatctggctcgccgcc
accgacgccgacatcgaccggatcatcggcgatcagggcccggacgcgctctcgctgagc
cgggccgagctcgaccggctgctggcggggcgacgcggacgcgtcaaggccaccctgacc
gatcaggcagtgatcgccgggctcggtaatctgctcggcgacgagatcctgtggcgggcc
cggatccatccgcagcggccggtgaactcgctgaccgacaccgaacacgatcggctccac
atcgcgatgcgcgatgtgctgcgcgcctcggtgcgggcgggccgggtgccggacgacccg
gactggctcaccgggcagcgcgacgacccggacccgcactgcccccgctgtggccatccg
ctgcgccacggccggatcgcgggccggaccaccctgtggtgcccccactgccagggggag
gaagcctga
DBGET
integrated database retrieval system
