Stieleria maiorica: Mal15_06550
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Entry
Mal15_06550 CDS
T09818
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
smam
Stieleria maiorica
Brite
KEGG Orthology (KO) [BR:
smam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smam03016
]
Mal15_06550 (rtcB_1)
Enzymes [BR:
smam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Mal15_06550 (rtcB_1)
Transfer RNA biogenesis [BR:
smam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Mal15_06550 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
Mal15_06550 (rtcB_1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEF96627
UniProt:
A0A5B9MBP6
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All DBs
Position
complement(990012..991514)
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AA seq
500 aa
AA seq
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MTTTHARTTPPMISTGEATAILPTETTAPIKVIGTEAIRETFDDLCIQQAINSRTAPGVT
DVVLNPDAHCGYGAPVGCVMVSPSHVYPGPVGVDIKCSMSLLQLDVPADVIEDRKTRRAL
IAAICKRTPTGAGKGQRSVPNGRRVNRTLGMQAVIEGASESVCEQLGIPSNWADRCEDSF
HVGHDDTRDALASRLDWLTDQRHMTNFSDKMTQLGSYGGGNHFGECEVVEIGDDDRSKSV
AETFGLRDGKVAFLSHCGSRGFGHNLASGQFKALQEKFSRWNIPLPAGDRQLVYAPLGSE
EANHYLDDMALGANFATVNHLLINALVLEAFQEVIPGTTGDLVYFISHNIARKEIVNNVP
SWVHRKGATRAFPGGHHALVGTPFAHTGHPILLPGNPRDGSAVMVADEGAEQSCFSVNHG
AGRVLGRKQAKRTLDQSTIDSELEDHDILSNCRFYPKDEAPAAYKDFNEVLASVKKAGLA
SEVARLKARFVIKDASKADD
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgacgcacgcccgaacgacccctccgatgatctccaccggcgaagcgacggcg
atcctgccgaccgaaacgaccgcgccgatcaaagtgatcggaaccgaggcgatccgggaa
acgttcgacgacctgtgcatccagcaggcgatcaattcgcggaccgcaccgggcgtgacc
gacgtggtgctcaaccccgacgcccactgcggttacggcgcgccggtcggatgcgtgatg
gtttccccctcgcacgtctaccccggaccggtgggcgtggacatcaagtgctcgatgagc
ttgctgcaactagacgtgccggcggacgtgatcgaggaccgaaagacccgccgcgcgctg
atcgctgcgatttgcaaacgcacgcccaccggagccggaaaaggacagcgcagcgtgccc
aacgggcgacgcgtgaaccggacgttggggatgcaagcggtgatcgaaggcgccagcgaa
tcggtctgcgaacaactgggaatccccagcaactgggccgatcgctgcgaagactcgttt
cacgtcggtcacgatgacacacgagacgccctggcatcacggctggactggctgaccgac
caacgccacatgaccaacttttccgacaagatgacccaactgggttcttacggaggcggc
aaccacttcggggaatgcgaagtcgtcgagatcggcgatgacgatcgatccaagtcggtt
gccgaaaccttcgggctgcgcgacggcaaggttgccttcctgtcccattgcggatcccga
gggtttggccacaaccttgcctcggggcagttcaaggcgctgcaggaaaagttcagccgc
tggaacatccccttgccggccggcgaccgacaactcgtctatgcaccgctgggatccgag
gaagccaaccactacttggacgacatggcactgggcgcaaacttcgcgaccgtgaaccat
ttgttgatcaatgccctcgtactggaagcgttccaggaagtgattcccggaacgaccgga
gatctggtgtacttcatcagccacaacatcgcccgcaaggagatcgtcaacaacgttccg
tcgtgggtgcaccgcaagggagcgacacgcgcgtttcccggcggtcaccatgcactggtc
ggaacgccgtttgcccacaccgggcatccgatcctgttgccgggcaaccctcgcgacgga
tcggcggtgatggtggccgacgagggtgccgagcaatcgtgcttcagcgtcaaccacggc
gccggacgggttttgggacgcaagcaggccaagcgaacgctggatcaatcgacgatcgat
tcagagctggaggatcacgatatcctgagcaactgccgcttctaccccaaggatgaagcg
ccggcggcgtacaaggatttcaacgaggtgcttgcaagtgtcaagaaagcaggcttggcc
agcgaggtggcacgtttgaaagcccggttcgtgatcaaggacgccagcaaggcagacgat
taa
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