Stieleria maiorica: Mal15_66440
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Entry
Mal15_66440 CDS
T09818
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
smam
Stieleria maiorica
Pathway
smam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mal15_66440 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smam03019
]
Mal15_66440 (rnr)
03016 Transfer RNA biogenesis [BR:
smam03016
]
Mal15_66440 (rnr)
Enzymes [BR:
smam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Mal15_66440 (rnr)
Messenger RNA biogenesis [BR:
smam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mal15_66440 (rnr)
Transfer RNA biogenesis [BR:
smam03016
]
Prokaryotic type
tRNA degradation factors
Mal15_66440 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
QEG02523
UniProt:
A0A5B9MMJ2
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All DBs
Position
complement(9377686..9379956)
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AA seq
756 aa
AA seq
DB search
MEISQDLADRVMRLVVSAEYRPSKPKQIAAILNLGPDDYRELRRTIKQLVLEGRLIYASN
HLVISTGAIGGPLDRIRGVFRMAAGGQFGFVRPGDSGDGAVSEDLFIPPGQTGGAFEGDL
VEVKVRPSRRGGSEGSVCRIIERSRRQFTGTFTPVNGRPAVYLDGTPHDAPVFIGDIQGL
PIEKDDKVFVEVVTFPGENGKGGEAVLLERLGSTNNPGIDTLTIMRQFGLPDEFPEAVIA
EARQRADEFDEDNPPADRLDLTGHLTLTIDPYDARDFDDAISLVREDQGRWRLWVHIADV
GYFIHPGGQLDQEARQRATSVYLPDRVIPMVPEIISNHLASLQPEKVRLAKSVEIEMTDD
GTVIHTEVHNSVIRSDMRLHYQLVDQFLESPDKYREKWGDAICDMLGDMHALAMTIRKRR
FKRGAISMDMPEVKLQLDRSGKVKGAYRTENTESHQLIEEFMLAANQAVATWLDDAGLNF
LHRIHPPPERRKLRQLSHFVRDLRLGIDSVESRFEIQHVLDRVAGTPLEDAVNFAVLKSM
NKAVYGPQTDGHYALDMQHYCHFTSPIRRYPDLTVHRLIDRLRDGEKTPDESVGALLKLG
HHCSDMERNAAQAERELTELKLLHYLKKHVGDTMTAVISRVFADGFLARCIKLPVDGYVS
VDQLPSDQYRFERRGQMLVGFKAHHRYRLGDQLTVKISRVDLIQRELFLEPVKNHSVGKS
NPNARSGKSATNHRGKSTHKAKRKKDRRQKGKRKRR
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggaaatctcacaagaccttgccgaccgcgtgatgcggttggtcgtttcggcggaatac
cggccgagcaaacccaaacagatcgccgccattttgaacctcggtccggatgattaccgg
gaactgcggcgaacgatcaaacaactcgtcttagaaggccggttgatttatgcgtccaac
cacctggtgatcagcacgggggccatcggcggccccctggaccgcattcgcggcgtattt
cggatggccgctggcggccaattcggattcgtccgccccggggactccggtgacggagcg
gtcagcgaagacctgttcatcccgccgggacagaccggcggggcgttcgaaggcgacctg
gtcgaagtcaaggttcggccgagtcgtcgcggcggaagcgaaggcagcgtgtgccgaatc
atcgagcgatcgcggcgccaattcaccggcacgttcaccccggtcaacggccgcccggcg
gtctacttggacggcaccccgcacgacgccccggtctttatcggcgacatccaaggcttg
ccgatcgagaaagacgacaaagtgttcgtcgaagtggtgacgttcccgggcgaaaacggc
aagggcggcgaagcggtcctgttggaacgactcggcagcaccaacaaccccggaatcgac
acgctgaccatcatgcggcaattcggtttgcccgatgagttccccgaagcggtgatcgcc
gaagcgaggcagcgtgccgatgaattcgacgaagacaatccgccggccgatcggctggat
ctgaccggacatctgacgctgacgatcgacccctatgacgcgcgtgactttgacgacgcg
atttcactggttcgtgaagaccaaggccgctggcgattgtgggtgcacatcgccgacgtc
ggctacttcattcatcccggcggccagctggaccaggaggctcgtcagcgggcaacgagt
gtttatctgcccgaccgcgtgatcccgatggtgcccgaaatcatcagcaatcacttggcc
agtcttcagccggaaaaggtccgcttggccaaatcggtcgagatcgaaatgaccgacgac
ggcaccgtgatccacaccgaagttcacaacagcgtgatccgcagtgacatgcggttgcac
tatcagttggtcgaccagttcttggagagccccgacaagtatcgcgagaaatggggcgat
gcgatttgcgacatgttaggcgacatgcacgcgttggcgatgacgatccgcaagcgacga
tttaaacgcggcgcgatctcgatggacatgcccgaagtcaaattgcaactcgatcgcagc
ggtaaggtcaaaggcgcctaccgaacggagaacaccgagagtcatcaattgatcgaagag
ttcatgctggcggccaatcaggccgttgcgacctggctggatgatgccgggttgaacttc
ctgcaccgcatccacccgccaccggaacgacgcaagctgcgtcaactgtcgcactttgtt
cgcgacctgcgactggggatcgattcggtcgaaagccgtttcgaaatccagcacgtcctg
gaccgtgtggccggcacgccgctggaagacgccgtcaatttcgcggtgctcaagagcatg
aacaaagccgtctatggccctcagaccgacggccactacgcactcgacatgcagcactac
tgccacttcaccagtccgatccgtcgctacccggatttgacagtgcaccgtctgatcgat
cggcttcgcgacggcgaaaagactccggacgaatcggtcggtgcgttgctaaaactgggg
caccattgcagcgacatggaacgcaacgcggcccaagccgaacgcgaattgaccgaactg
aagctgctgcactacttgaagaaacacgtcggtgacaccatgaccgccgtcatcagccgg
gtctttgccgacggttttctggcccgttgcatcaagctgcccgtcgacggttatgtcagc
gtggaccagctgccatcggaccagtatcgattcgaacgccgcggccaaatgctggtcgga
ttcaaggcccatcaccgctatcgtctgggtgatcaattgacggtcaaaatcagccgcgtc
gatctgatccagcgtgagctgttcctcgagccggtcaaaaaccactcggtcggcaagagc
aaccccaacgcccgcagcgggaaatccgccacgaaccaccgcggcaagtcgacgcacaaa
gccaaacgcaaaaaggaccgccgacaaaaaggcaaacgcaaacgacgctga
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