Solibaculum mannosilyticum: C12CBH8_01200
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Entry
C12CBH8_01200 CDS
T07247
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sman
Solibaculum mannosilyticum
Pathway
sman03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sman00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C12CBH8_01200 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sman03400
]
C12CBH8_01200 (mfd)
Enzymes [BR:
sman01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C12CBH8_01200 (mfd)
DNA repair and recombination proteins [BR:
sman03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C12CBH8_01200 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
LSDAT_prok
Motif
Other DBs
NCBI-ProteinID:
BCI59481
UniProt:
A0A7I8CYC8
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All DBs
Position
135328..138801
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AA seq
1157 aa
AA seq
DB search
MTFLTNALKGLPEFDTVAGCIRAGRAPMAVSGLSGIQKAHFVYALGQMLERPAIVLAGDE
SECAQLQRDLEAMGARVLLYPARDLTFQKLEGISREYEHTRLQVLYALQNGQCDVVLTTP
DAAMLYTIPPALLQERTVRLHSGQRIPLKQMAAALVDAGYVRADQVDGIGQFSIRGGICD
FYAPGTSAPTRVEMWDDEIDTLLSFDPETQRRTEQLEEAVITPAVEILPPPDDQLSEGIR
RLQKGLRGAKHQAALNHLSEDLDRLEGGGRLHALDKYLPLIYPQRASLFDYIGDGMLFVS
DPVKVKERAHSFHWQMGEDIKSMLEEGILCKGITEFSLPGEQMPGIYEQYRAVYLDAFTR
AGYETPLRHLISVNTRQLSVWAGGLDLLKEDIEPMLDRNWAVAVLAGTGKSADNLCRNLR
ELGLPAVYVERCEMLIPGQITILPGSLSAGMEYPGAKVGILTQGQIAAVRKRKVRHKAGD
TLTSLSDLSIGDYVVHATHGIGLFEGIHKMDVHGVIKDYIKIRYDKGDILYVPVTQLDLV
SKYIGPKEDSKVKLHRLGGTEWQKARSRVRKAVKDMAKQLIKLYAERMKVEGFACGPDTD
WQSDFERRFAYEETEDQLRCVDEIKADMERSFPMDRLLCGDVGFGKTEVALRGAFKCIDN
GRQCALLVPTTILAWQHYQTILTRFEGFPIKVEVLSRYRTPKQQAAILNKLRRGEIDMIV
GTHRLVQKDVQFKNLGLVIVDEEQRFGVAQKEKLKELFPGVDCLTLSATPIPRTLNMAMS
GVRDMSVIEEAPQDRHPVQTYVVEYDPAVLDEAIRRELRRGGQVYYLHNRVESIEQTAYR
ISQRIPGAKVGVAHGKMTEEALSDVWEQLLGNEINVLVCTTIIETGVDIPNCNTLIIENA
DRMGLAQLHQLRGRVGRSSRRAYAYLTFAGGKVLSEISTKRLAAIREFTEFGSGFKIAMR
DLEIRGAGNILGAEQHGHMEAVGYDMYLRLLSEAVDEEKGEKTTRREAECLVDVQIGAHI
PEQYIPSAAQRLDIYRRIADIRTQEDVSDVLDELIDRFGDVPDAVAGLVEVSLLRNMAAD
LGISEISQKNDRLLFYIHIPDLERTSRLMANMKGRVMLSAGQKPYIQVKMLPGQSPLACM
RETLEGMADVKEEKRSK
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgacctttttaacaaatgccctcaaagggcttccggaatttgatactgtggccggatgc
atccgagccggccgtgctcccatggcggtatcgggactgtcgggcatccagaaagcccat
tttgtatacgccttggggcagatgttggaaaggccggctatcgtactggcaggggatgag
tcggaatgcgcccagctgcaacgggatctggaagccatgggagctagggttttgttatat
ccggccagggacttgacttttcagaagctggaaggcatttcccgggaatacgagcacacc
cgtcttcaggtactctacgccctgcaaaacggccaatgtgacgtggtgctcacaacccca
gacgccgccatgctctacaccattccgcccgctcttttgcaggagcggacggtgcgcctg
cattccggacagcgcattccgcttaaacaaatggcggcggccctggtggatgccggttat
gtgcgggccgaccaggtcgacggcattgggcaattctccatccggggcggtatctgcgat
ttttatgctccggggacttcggcgcccacccgcgtggagatgtgggacgatgagatcgac
accctcctctcctttgaccctgagacccaacgccgtaccgagcagctggaggaggcggtt
atcacgccggctgtggagatcctccctcccccggacgatcaattgtcagaggggatccga
cgcctgcaaaaagggcttagaggtgccaaacaccaagcggctctcaaccatctgagcgag
gatctggatcggttggaggggggcggaaggctccacgctttggacaaatacttgccgctc
atttatccgcagagggcgagcctttttgactacatcggggatggaatgctgtttgtatcc
gatccggtaaaggtcaaagagagggcccattccttccactggcagatgggagaggacatc
aagtccatgctggaggagggcatcctctgcaagggaatcacggaattcagcctgccgggc
gaacaaatgccggggatttatgaacaatatagagccgtttatttggatgcattcacaagg
gcgggatacgagacgcctttgagacatctgatatcggtcaatacccgtcagctgtcggtg
tgggccggggggcttgacctgctcaaagaggacatcgaacccatgctggatcgcaattgg
gcggtggccgtgctggcggggaccgggaagtcggccgacaatctgtgccgtaacctgcgg
gaattgggattgcctgcggtttatgtggaacggtgtgaaatgcttataccgggacagatc
accattttgcccggcagcctgtcggccgggatggagtatcccggggccaaagtggggatc
ctcacccagggacagattgccgccgtccgcaaacgcaaggtgcgtcataaggcgggggac
accctcaccagcctttccgatctctccatcggggattatgtggtgcacgccacccacggc
atcggcttgtttgaaggcatccacaagatggacgtccacggcgtcatcaaggactatatc
aagatccggtacgacaagggggatatcctctacgtcccggtgacgcagcttgacctggtg
tccaaatacatcggccccaaagaggacagcaaggtgaagctccaccgtctgggcggcacc
gagtggcagaaagcccggtcccgggtgcgcaaggcggtcaaggacatggccaaacagctc
atcaagctgtacgccgagcgcatgaaggtggaggggtttgcctgcggtccggacaccgac
tggcaaagcgattttgaacggcgcttcgcctacgaggagaccgaggatcagctgcggtgc
gtggacgagatcaaagctgatatggagcggtcttttcccatggaccggctgctgtgcggc
gacgtgggattcggcaaaaccgaagtggccctaagaggcgccttcaagtgtatcgacaac
ggccgtcagtgtgctctgctggtgcccacaaccatcctggcctggcagcattatcagacc
attctgacccgttttgagggattccccatcaaggtggaggtgctgtcccgctaccgcacg
ccaaagcaacaggccgccatcctcaataagctcaggcgcggggagatcgacatgatcgtc
ggcactcaccgtctggtgcagaaggacgtccagtttaaaaacctgggtctggtcattgtg
gacgaggaacaacggttcggcgtggcccagaaggagaaactcaaagagttgttcccaggg
gtggactgcctgaccctgtcggccacgcccatcccgcggaccctcaatatggccatgtca
ggggtgcgggatatgtcggtcatcgaggaggcccctcaggaccggcatccggtgcagacc
tacgtggtggagtacgacccggctgttttggacgaggctatccggagggaactgcgccgc
ggcggacaggtttactacctgcacaaccgggtggaatccatcgagcagacggcctaccgc
atctcccagcgcatccccggggccaaggtaggggtggcccacggcaagatgacggaggaa
gctttgtcggacgtgtgggaacagcttctgggcaatgagatcaacgtcctggtgtgcacc
accatcattgagacaggggtggatatccccaactgcaataccctcatcattgagaacgcc
gaccgtatgggccttgcccagctgcaccagttgagaggacgtgtgggacgttcctcccga
cgggcttacgcctatctcacctttgccggggggaaggtgctttcggagatttccaccaaa
cgtctggccgccatccgggaatttacggaattcggatcgggattcaagatcgccatgcgg
gatctggagatccggggcgccggcaacatcctgggcgcagaacagcacggccatatggag
gcggtggggtacgacatgtacttgcgtcttttgtccgaggcggtggacgaggagaagggg
gagaaaaccacacgtcgggaagccgagtgtctggtggacgtccagatcggcgcccacatc
ccggagcagtacatccccagtgccgcccagcgtctggacatctatcgccgcatcgccgac
atccgcacccaagaggatgtctcagacgtgctggatgagctcatcgaccgctttggcgac
gtgcccgacgcggtggccggactggtggaggtatctctgctgcgcaatatggctgccgat
ctggggatcagcgagatctcccagaaaaacgaccgtctgctgttttacatccacatcccc
gatctggaacggacctcccgcctgatggccaatatgaagggtcgggtcatgctcagcgcc
ggccagaagccatatatccaggtcaagatgctgccgggacagtccccactggcctgcatg
cgggagacattggagggcatggcagacgtcaaagaggaaaaaaggtccaaataa
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