Solibaculum mannosilyticum: C12CBH8_02130
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Entry
C12CBH8_02130 CDS
T07247
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
sman
Solibaculum mannosilyticum
Pathway
sman03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sman00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C12CBH8_02130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sman03019
]
C12CBH8_02130
03009 Ribosome biogenesis [BR:
sman03009
]
C12CBH8_02130
Messenger RNA biogenesis [BR:
sman03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C12CBH8_02130
Ribosome biogenesis [BR:
sman03009
]
Prokaryotic type
rRNA helicases
C12CBH8_02130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Hyccin
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCI59574
UniProt:
A0A7I8D4L4
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All DBs
Position
245421..247148
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AA seq
575 aa
AA seq
DB search
MQKMLFSDMPISDAIKQAVAELGFEEATSIQTASIPLILSGRDIIGQSQTGTGKTAAFSI
PAIEKINPKDRRTVQVLILCPTRELAVQACDEINKFAKYVEGVRVVPVYGGQPIDRQFRA
LRMGAQIVVGTPGRVMDHMRRGTLKLDQLRMIILDEADEMLSMGFREDIETILQDVPEER
QTLLFSATMSPEILQLTRKYQTDPELIKVTREQLTVPSIEQYYYEVPSSKKVEVLCRLLD
VYNPRLSMVFCNTKRQVDELVSQLQLRGYLADGLHGDMKQPARDHVMDMFRAGNIDVLVA
TDVAARGIDVDDIGAVFNYDIPQDEEYYVHRIGRTGRAGKEGRAFTFVTGRREVYALRGI
MRYTNCKIQLKAVPSSSQVREKRVGKFMDKVRGVIQEGNLEEYLQIVDDMSGEDLTSADI
AAALVKMALVKEGRRGLPSREDDALFAAHARSQNRGSMDGRRRNRDRDQGSGRMSGRPRG
ERGGDRERVPMARLSISIGRQNKVNAGHILGAIAGETGLPGKTFGRIEIQDRQTIVEVPV
QHRHEVLEAMKGCRILGKQVVTEEASGNFHRRPQK
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaaaatgctattttccgatatgcccatttccgacgccatcaaacaggcggtagct
gaactggggtttgaggaggccacctccattcagaccgccagtatcccgctgattttgtcg
ggcagggacatcatcggccagtcccagaccggtactggcaaaaccgccgccttcagcatc
ccggccattgagaagatcaatcccaaggatcgccggacggtgcaggtcctgatcctctgt
cccacccgcgaattggcggtacaggcctgcgatgagatcaataaattcgccaaatacgtg
gaaggggttcgggtggtgcctgtgtacggcggccagcccatcgaccgtcaattccgggcg
ctgcgtatgggcgctcagatcgtggttggaaccccgggccgcgtcatggatcacatgcgt
cgtgggaccctcaagctggatcagctgcgcatgatcatcctggacgaggccgacgagatg
ctcagcatgggcttccgggaggacattgagaccatcttgcaggacgtgccggaggaacgg
cagacgttgttgttttcagccactatgtccccggagatcctacagttgacccggaagtac
caaaccgatccggagctcatcaaggtgacgagggaacagctgacggtgccgagcattgaa
cagtattactatgaagtgccctccagcaagaaggtggaggtactgtgccgccttctggac
gtgtacaatccccgtctttccatggtgttctgcaacaccaagcgccaggtggatgagctt
gtcagtcagctgcaactgaggggatacctggccgacggtcttcacggcgatatgaagcag
ccggcccgcgaccacgtcatggatatgttccgtgccggcaacatcgacgtgctggtggcc
accgacgtagccgcccgcggcatcgatgtggacgacatcggcgctgtgtttaactatgac
atcccccaggacgaggagtattatgtccatcgcatcggacgtaccggccgggccggcaaa
gagggcagggcctttacctttgtcacaggacggcgggaagtctatgctttgcgggggatc
atgcggtataccaactgcaagatccagcttaaagctgtgccgtccagcagccaggtccgg
gaaaagcgagtgggcaagtttatggataaggtgcgtggcgtcattcaggaaggcaatttg
gaggagtatctccagattgtggacgacatgtcaggcgaagatctcacttcggccgatatc
gccgccgctctggtcaagatggcgcttgtcaaagagggacggcgtggccttccctcccgg
gaggacgacgccttgtttgccgcccacgcccgcagccagaatagaggttccatggatgga
cgccgccggaaccgcgaccgtgaccaagggtccggacgcatgagcggacgtccccgaggc
gaacggggcggggatcgagagagggtgcctatggcgcgcctgtccatcagcatcggccgt
cagaataaggtgaatgccgggcacatcctgggagccattgcgggagaaaccggactgccg
ggaaaaacgtttgggcgcattgagatccaggatcgtcagaccatcgtagaagtgccggtt
caacaccgtcacgaggtgctggaggccatgaaaggatgccggatcctgggaaaacaggtt
gtcaccgaagaggcgtcgggcaattttcacagacggcctcagaaataa
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