Solibaculum mannosilyticum: C12CBH8_17200
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Entry
C12CBH8_17200 CDS
T07247
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sman
Solibaculum mannosilyticum
Pathway
sman03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sman00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C12CBH8_17200 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sman03021
]
C12CBH8_17200 (rpoB)
03400 DNA repair and recombination proteins [BR:
sman03400
]
C12CBH8_17200 (rpoB)
Enzymes [BR:
sman01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C12CBH8_17200 (rpoB)
Transcription machinery [BR:
sman03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C12CBH8_17200 (rpoB)
DNA repair and recombination proteins [BR:
sman03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C12CBH8_17200 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BCI61081
UniProt:
A0A7I8D2M4
LinkDB
All DBs
Position
complement(1883679..1887395)
Genome browser
AA seq
1238 aa
AA seq
DB search
MVNVKPVKLGNNERMSFSHINEVLDMPNLIEVQKNSYQWFLDEGLQEVFRDVSAITDYTG
NLVLDFIDYYLDDQPKYSVEECKERDVTYAAPLHVRARLVNKETGEIKESEVYMGDFPKM
TDSGTFIINGAERVIVSQLVRSPGVYYKMNYDKTGKKLFSATVIPNRGAWLEYETDANDI
FYVRIDKNRKLPVTTFIRALGLGSDQEILDFFGEDVRMIETLKKDVATNKEEALIEVYKK
LRPGEPPTVESAQTHIDGLFFDARRYDLSHVGRYKYNKKLAIATRLTGQTLSQPVVNPMT
GELMAEAGETLTRERAQEIEAAGVSCAFVTVDEREVKVLSNGMVRLEDFVDFDISDLQIK
EKVRFSILQEILEEHEEEEDIKEAIRARQDELIPKHIILDDILASINYLNCLGNDVGTTD
DIDHLGNRRIRSVGELLQNQFRIGFSRMERVIKEKMTLQAQDLDVITPQNLINIRPVVAA
IKEFFGSSPLSQFMDQTNPLAELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPI
ETPEGPNIGLISYLATYAKINEYGFVEAPFRRVDKETGIVTDEVVYMTADVEDEYIVAQA
NEPLDEDGRFIRPKVNARHRDEFLEIEPTRVDFMDVSPKMVVSVATAMIPFLENDDANRA
LMGSNMQRQAVPLLKPCSPVVGTGMEYKAAVDSGVVVLAKKPGVVEKVCANEIQIRNDEG
DLDIYHVTKFLRSNQGTCINQRPVVNRGQRVIKGEVIADGPATDNGEISLGKNALIGFMT
WEGYNYEDAVLINEKVVRDDVFTSIHIEKYEIEARDTKLGAEEITRDIPNVGEDALKDLD
ERGIIHIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEYG
IVVDVKVFTRENDDEMSPGVNMVVKCYIAQKRKISVGDKMAGRHGNKGVVSRILPEEDMP
FLPDGRPLDIVLNPLGVPSRMNIGQVLEVHLGYAAMALGWKVMTPVFDGAHEGDIQELLE
MAGKNRSGKTILCDGRTGEPFENPVTVGYMYFLKLHHLVDDKIHARSTGPYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDIIGRVKTYEAIVKGQNVPKPGVP
ESFKVLLKELQSLGLDVMVLDKDDEEIDLRQTFDDDDDVGLHSVDDDAFSEVKDESEMEG
YSVEDAEDLADGSDAEDLFASLAGGDLFGDDDDTLDEE
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatgtgaaaccagtcaagctggggaacaacgagcggatgagtttttctcacatc
aatgaagtgctggacatgcccaacctgattgaagtgcagaagaattcctatcagtggttc
ctggatgagggactccaagaggttttccgggatgtatcggccatcaccgattacaccggc
aaccttgtgctggactttattgattattatctcgacgatcagcccaaatattccgtggag
gaatgcaaagagcgcgacgttacctatgcagcgcctttgcacgtgcgcgcccgtctggtc
aacaaagagaccggcgagatcaaagagtcggaagtctacatgggcgatttccccaagatg
accgacagcggcacctttatcatcaacggtgccgaacgcgttatcgtgtcccagttagtg
cgttcccctggcgtatactacaagatgaattacgataagaccggtaaaaagttgttctcc
gccactgtcatccccaaccgaggcgcgtggctggagtatgaaaccgatgcaaacgatatt
ttttacgtccgcatcgataaaaaccgcaaattgccggtgacgacctttatccgtgctctt
ggactggggagtgatcaggagattctggacttcttcggtgaagacgtccgcatgatcgag
accctaaagaaagatgtagctaccaacaaggaagaggctctcatcgaggtttataagaaa
ctgcgtcctggcgaacctcccacagtggagagcgcccagacccacatcgacggcctgttc
tttgacgcgagacgttatgacctctcccacgtgggccgctataagtacaataagaagctg
gccattgctacccgtctcaccggccagacattgtcccagccggtggtcaatcccatgacc
ggcgagctcatggccgaggcaggggagactttgaccagagaacgggctcaggaaatcgaa
gctgccggcgtcagctgcgcctttgtgacggtagatgagagagaggtcaaggtgctgtcc
aacggcatggtccgtttggaagactttgttgactttgatatttccgaccttcagatcaaa
gagaaggttcgtttctccatcctacaggagatcctggaggagcatgaagaggaagaggat
atcaaagaagccatccgtgcccgtcaggatgagctcattcccaaacacattattttggac
gatattttggcctccatcaactatctcaactgcctgggcaacgacgtaggcaccaccgac
gatatcgaccatctgggcaaccgccggattcgttcggtgggcgaactgctgcaaaaccag
ttccgcatcggcttcagccgtatggagcgggtcatcaaggagaagatgaccctccaagct
caggatctggatgtcattacccctcagaatttaatcaatatccgcccggtggtagcggct
atcaaagagttctttggttcgtcgcctctgtcccagttcatggatcagaccaaccccttg
gcggaactgactcataaacgccgtctgtcggccctgggccccggcggtttgagccgtgac
cgtgccggattcgaagtgcgcgacgttcactacagccattacggccgcatgtgtcctatc
gaaacccctgaaggtcccaacatcggcctgatttcttatttggctacctatgctaagatc
aatgaatacggctttgtagaagcccccttccgccgcgtggataaggaaaccggcatcgtc
accgacgaagtggtttacatgaccgccgatgtggaagatgaatatatcgtcgcccaggcg
aacgaaccgttggatgaagacggacgctttatccgtcccaaggtcaatgcccgtcatcgc
gacgaattcctggaaattgaacccacccgcgtcgatttcatggacgtttcccccaagatg
gttgtatcggtggctacggccatgatccccttcctggaaaacgacgacgcaaaccgcgca
ttgatgggttccaacatgcagcggcaggctgtgccgcttctcaagccctgttccccggtg
gtcggcactggtatggagtacaaggcggcggtggattccggcgtcgtagtgctcgccaag
aagcccggcgtggtggaaaaggtatgcgccaatgagatccagatccgcaatgacgaaggt
gatttggatatttaccacgtcaccaagttcctgcgctccaaccaaggaacctgtatcaac
cagcgtccggtggtcaaccgcggccagcgcgtcatcaagggcgaggtcatcgccgatggc
cccgccaccgataacggtgagatcagtttgggcaaaaacgccctcatcggcttcatgacc
tgggagggttacaactacgaggacgccgttctcatcaacgagaaggttgtccgggacgat
gtctttacctctatccacattgaaaaatacgagattgaagcccgcgataccaagttgggc
gcagaagaaattacccgtgatatccccaacgtgggcgaagacgccctcaaggatctggat
gagcgcggtattatccacatcggtgccgaggtccgtgccggcgatatcctggtgggcaaa
gtgacccccaagggtgaaaccgaactgacggctgaagagcgtctgctccgcgccatcttc
ggcgagaaggcccgcgaggtgagggatacctccctgcgcgtgcctcacggtgaatacggc
attgtggtggacgtcaaggtgttcacccgtgaaaacgacgacgaaatgagccccggcgtc
aacatggtggtcaagtgctacatcgcccagaagcgcaagatctcggtgggcgataagatg
gccggacgtcacggcaacaagggcgttgtatcccgcatcctgccggaggaggatatgccc
ttcctgcccgatggccgtcccttggacatcgtcttgaaccccttgggcgttccgtcccgt
atgaatatcggtcaggtgctggaagtgcatctgggctacgccgccatggcgctgggctgg
aaggtcatgaccccggtctttgacggcgctcacgaaggcgacatccaggaacttttggaa
atggccggtaaaaaccgcagcggtaaaaccattttgtgcgacggccgtaccggcgagccc
tttgagaatccggttactgtcggctacatgtacttcttaaaactccatcacttggttgac
gataagattcacgcccgttccaccggcccctactccttggttacccagcagcctctgggc
ggtaaagcccagttcggcggccagcgcttcggcgagatggaagtgtgggcattggaggct
tacggcgcagcttataccctccaggagatcctcaccgtcaagtcggacgatatcatcggc
cgtgtcaagacatacgaagccattgtcaagggtcagaacgtgccgaagccgggcgtcccg
gaatccttcaaggtgctgcttaaggaattgcagtccttgggactggacgtcatggtgctg
gataaggacgatgaagagatcgacctgcgtcagacctttgacgatgacgacgatgtgggc
ctgcattcagtggacgacgacgccttcagtgaggtcaaggatgagagcgagatggaaggc
tacagcgtagaggacgcagaggatctggccgacggcagtgatgcggaggatttgtttgcc
tccctggccggaggggatctgtttggcgatgacgacgatacgttggatgaagagtaa
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