Streptomyces marincola: CAG99_16945
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Entry
CAG99_16945 CDS
T08123
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smao
Streptomyces marincola
Pathway
smao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAG99_16945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smao03400
]
CAG99_16945
Enzymes [BR:
smao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAG99_16945
DNA repair and recombination proteins [BR:
smao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CAG99_16945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ARQ70305
UniProt:
A0A1W7CZY8
LinkDB
All DBs
Position
3820437..3823988
Genome browser
AA seq
1183 aa
AA seq
DB search
MTLTGLLDAVTEESALAEAVRVAADGARRHVDLVGPPAARPFAVAALARSAGRPVLAVTA
TGREAEDLAAALRSLLPPDGVVEYPAWETLPHERLSPRADTVGRRLAVLRRLAHPSADDP
AAGPVSVVVAPVRSVLQPQVAGLGDLEPVALRGGASADLADVTERLAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVRARAAELARSHPELDELLGRIAEGIAVDGMESLAPVLVDDMELLLDVLPAGSMAV
VCDPERVRGRAADLVATSQEFLQASWVAAAMSDTGEAPIDVGAASLRGLAEVREHAAELG
MPWWSVSPFSPDLAEDAEDDTLRLGLRAPETYRGDTARALADTKGWLADGWRVVYVTEAH
GPAVRTAEVLAGEGIAARLTTPLTGQVAPSVVHVACGAVEHGFVAPGLRLAVLTETDLTG
QKAAGREGARMPARRRKTLDPLTLEPGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEY
APAKRGQPGDRLFVPTDQLDQVTKYVGGEAPSLHRLGGADWTKTKARAKKAVKEIAADLI
KLYSARMAAPGHAFGADTPWQRELEDAFPYIETPDQMTTIAEVKEDMEKSVPMDRLICGD
VGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVNVRPLSRFQTE
ADARAVTEGLRDGSVDIVIGTHRLFSSEVKFKDLGLVIVDEEQRFGVEHKEQLKKLRANV
DVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEERQIGAAIRRELLRE
GQVFYIHNRVESIDRVAARLRQIVPEARIATAHGQMGETALERVVVDFWEKRFDVLVSTT
IVESGIDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHER
LATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAT
LEEGGGEPDESLLEVKIELPVDAHVPHDYAPGERLRLQAYRSIAAANSEDDIRAVREELA
DRYGPLPEPVENLLLVAGLRMLARACGVTDITLQGSRIRFSPVELRESQELRLNRVYPGS
VLKRATGQVLVPRPTTARIGGKPLTGRELLAWTGEFLTTIPGA
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcaccggcctgctcgacgccgtaaccgaagagtccgccctggccgaggcggtc
cgcgtggccgccgatggcgccaggcgccacgtggacctcgtcggcccgccggccgcgcgc
ccgttcgcggtggccgcgttggcccgttccgccgggcggccggtcctcgcggtgacggcg
accggccgggaggccgaggacctggcggcggcgctgcgctcgctgctgccgccggacggc
gtcgtggagtacccggcgtgggagacgctgccgcacgaacggctctcgccgcgcgccgac
accgtcggccggcggctcgccgtgctgcggcggctcgcgcacccgagcgcggacgacccg
gcggccgggccggtgtccgtggtggtcgcgccggtgcgctcggtgctccagccgcaggtg
gccgggctcggcgacctggagcccgtcgcgctgcgcggcggcgcgagcgccgacctggcc
gacgtgaccgagcggctggccgccgcggcctactcccgggtcgaactggtcgagaaacgc
ggcgagttcgcggtccgcggcggcatcctcgacgtgttcccgccgacggaggagcatccg
ttgcgcgtggagttctggggcgacgacgtcgaggagatccggtacttcaaggtcgccgac
cagcggtcgctcgaagtcgccgagcacggcctgtgggcgccgccgtgccgcgagctgctg
ctgaccgacgaggtgcgggcgcgggccgccgagctggccaggagccacccggagctggac
gagctgctcggcaggatcgccgagggcatcgcggtggacggcatggagtccctggccccc
gtgctcgtggacgacatggagctgctgctcgacgtgctgccggccggcagcatggcggtg
gtctgcgacccggagcgcgtgcggggccgggccgccgacctggtggccaccagccaggaa
ttcctccaggcgtcgtgggtggccgccgccatgtcggacaccggtgaggcgccgatcgac
gtgggcgcggcctcgttgcgcggcctggccgaggtccgcgagcacgcggccgagctcggc
atgccgtggtggtcggtctcgccgttctcgcccgacctggcggaggacgcggaggacgac
acgctgcggctcgggctgcgcgccccggagacgtaccggggcgacacggcgcgggcgctg
gccgacacgaaggggtggctggccgacggctggcgcgtggtgtacgtcacggaggcgcac
ggcccggccgtgcgcactgcggaggtgctggccggcgagggcatcgccgcgcgcctgacc
acgccgctgaccgggcaggtcgcgccctccgtggtgcacgtggcctgcggcgcggtggaa
cacggcttcgtcgccccggggctgcggctcgcggtgctcaccgagaccgacctgaccggg
cagaaggcggcgggccgcgagggcgcgcggatgccggccaggcggcgcaagacgctcgac
ccgctcacgcttgagcccggtgactacatcgtgcacgagcagcacggcgtgggccgctac
gtcgagatggtgcagcgcacggtgcagggcgccacccgcgagtacctgctcgtggagtac
gcgcccgcgaagcgggggcagccgggcgaccggctgttcgtgcccaccgaccagctggac
caggtgaccaagtacgtcggcggcgaggcgccctcgctgcaccgcctcggcggggcggac
tggacgaagacgaaggccagggcgaagaaggcggtcaaggagatcgccgccgacctgatc
aagctgtactcggcgcggatggccgcgcccgggcacgcgttcggcgcggacacgccgtgg
cagcgggagcttgaggacgcgttcccctacatcgagacgcccgaccagatgacgaccatc
gccgaggtcaaggaggacatggagaagtcggtcccgatggaccggctgatctgcggcgac
gtcggctacggcaagaccgagatcgcggtgcgcgcggcgttcaaggcggtgcaggacggc
aagcaggtcgcggtgctcgtgccgacgacgctgctggtgcagcagcacttcgggacgttc
tcggagcggtacgcgcagttccccgtgaacgtgcgcccgctgtcgcgcttccagacggag
gccgacgcgcgcgcggtgaccgaggggctgcgggacggttcggtcgacatcgtgatcggc
acgcaccggctgttctcgtccgaggtgaagttcaaggacctcggcctggtgatcgtcgac
gaggagcagcggttcggcgtcgagcacaaggagcagctgaagaagctgcgggccaacgtg
gacgtgctgaccatgtcggccacgccgatcccgcgcacgctggagatggccgtgaccggc
atcagggagatgtcgacgatcacgacgccgcccgaggagcggcacccggtgctgacgttc
gtcgggccctacgaggagcggcagatcggggcggcgatccgcagggagctgctgcgcgag
gggcaggtcttctacatccacaaccgggtggagtccatcgaccgcgtcgccgccaggctg
cggcagatcgttcccgaggccaggatcgcgacggcgcacggccagatgggcgagacggcg
cttgagcgggtcgtggtggacttctgggagaagcggttcgacgtgctggtgtccacgacg
atcgtcgagtcgggcatcgacatctcgaacgccaacacgctcatcgtggagcgcggcgac
accttcggcctttcgcagctgcaccagctgcgcggccgggtgggccggggccgcgagcgc
ggctacgcgtacttcctctacccgccggagaagccgctgacggagaccgcgcacgaacgc
ctcgccacgatcgcccagcacacggagatgggcgcgggcatgtacgtggcgatgaaggac
ctggagatcaggggcgcgggcaacctgctgggcggggagcagtcggggcacatcgcgggc
gtcgggttcgacctgtacgtgcgcatggtcggcgaggcggtggcggactaccgcgcgacg
cttgaggagggcggcggcgagccggacgagtcgctgctcgaagtgaagatcgagctgccg
gtggacgcgcacgtgccgcacgactacgcgccgggggagcggctgcgccttcaggcgtac
cggtcgatcgcggcggcgaactccgaggacgacatccgcgcggtgcgcgaggagctggcc
gaccggtacggcccgctgcccgagccggtggagaacctgctgctggtcgccgggctgcgc
atgctggccagggcgtgcggggtcacggacatcacgttgcagggcagcaggatcaggttc
tcgccggtggagctgcgggagtcgcaggagctgcggctgaaccgggtctacccggggtcg
gtgctcaagcgtgcgacgggtcaggtgctggtgccgcggccgacgacggcgcggatcggc
ggcaagccgctgaccgggcgggagctgctggcgtggaccggtgagttcctgacgacgatc
ccgggggcgtga
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integrated database retrieval system
