Serratia marcescens SM39: SM39_0621
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Entry
SM39_0621 CDS
T03592
Symbol
holA
Name
(GenBank) DNA polymerase III, delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
smar
Serratia marcescens SM39
Pathway
smar03030
DNA replication
smar03430
Mismatch repair
smar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SM39_0621 (holA)
03430 Mismatch repair
SM39_0621 (holA)
03440 Homologous recombination
SM39_0621 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smar03032
]
SM39_0621 (holA)
03400 DNA repair and recombination proteins [BR:
smar03400
]
SM39_0621 (holA)
Enzymes [BR:
smar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SM39_0621 (holA)
DNA replication proteins [BR:
smar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SM39_0621 (holA)
DNA repair and recombination proteins [BR:
smar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SM39_0621 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delt_C
DNA_pol3_delta
DNA_pol3_delta_C
AAA_lid_14
Motif
Other DBs
NCBI-ProteinID:
BAO32680
UniProt:
A0AAT9E847
LinkDB
All DBs
Position
complement(622003..623037)
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AA seq
344 aa
AA seq
DB search
MIRIYPEQLAAQLREGLRACYLLSGNEPLLLQESQDLLRQAAQQQQFSEHYSISLDAHTD
WDAIFGICQAMSLFASRQTLLLIFPENGPTAPIGEQLTKLATLLHEDILLILRGPRLTKA
QENSAWFKALSPHGALVSCQTPEQAQLPRWVATRAKAMKLELDDAANQLLCYCYEGNLLA
LSQALERLSLLHPDGKLTLPRVEQAVNDAAHFTPFHWLDALLAGKSKRAWHILQQLQQED
VEPVILLRTLQRELLLLLTLQRHMTSAPLRTLFDQHKVWQNRRPLVTQALQRLSGPQLQQ
AVQLLTQIELTLKQDYGQSVWPELETLSMLLCGKPLATSFTDAH
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcatttatccggaacaacttgccgcgcagctccgagaggggctgcgcgcttgt
tatttattgagcggcaatgaaccgctgctgctgcaggagagccaggatttgctccggcag
gccgcgcaacagcagcagttcagcgagcactacagcatttccctcgacgcccataccgac
tgggacgccatcttcggcatctgccaggcgatgagcctgttcgccagccgccagacgctg
ctgctgatcttccccgaaaacggcccgacggcgccgatcggcgaacagctgaccaagctc
gccacgctgctgcacgaggatatcctgctgatcctgcgcggcccgcgcctcaccaaagcg
caggaaaacagcgcctggttcaaggcgctcagcccgcacggcgccctcgtcagttgccag
acgccggaacaggcgcagctgccgcgctgggtcgccacgcgcgccaaggcgatgaagctg
gagttggacgacgccgccaatcagctgctgtgctactgctatgaaggcaacctgctggcg
ctgtcgcaggcgctggagcggctgtcgctgctgcacccggacggcaagctcacgctgccg
cgcgtcgaacaggcggtgaacgacgccgcccacttcacgccgttccactggctggatgcc
ctgctggccggcaagagcaagcgcgcctggcatattttgcagcagctgcagcaagaagac
gtggagccggtgatcctgctgcgcaccctgcagcgcgaactgctgctgctgctgacgctg
cagcgccacatgacttccgcgccgctgcgcacgctgttcgatcagcacaaggtctggcag
aaccgccgcccgctggtgacccaggcgctgcaacgcctgtccggcccccagctgcagcag
gcggtacagctgctgacgcaaatcgagctgaccctcaagcaggactatggccagtcggtc
tggccggaactggaaaccctgtcgatgctgctgtgcggcaaacccctggccacgagtttt
accgatgcccactaa
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