Serratia marcescens SM39: SM39_1368
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Entry
SM39_1368 CDS
T03592
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
smar
Serratia marcescens SM39
Pathway
smar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SM39_1368 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smar03019
]
SM39_1368 (rne)
03009 Ribosome biogenesis [BR:
smar03009
]
SM39_1368 (rne)
Enzymes [BR:
smar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SM39_1368 (rne)
Messenger RNA biogenesis [BR:
smar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SM39_1368 (rne)
Ribosome biogenesis [BR:
smar03009
]
Prokaryotic type
rRNA processing factors
SM39_1368 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
BAO33413
LinkDB
All DBs
Position
complement(1393339..1396713)
Genome browser
AA seq
1124 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAVIVPNDEMQ
TPHYSVLRVRKGEETSTLSYLLPKLHEEDMERPLEDAPMERKRPEQPALASFSLSADAPP
PAEEPVAVAKPAAAKAKAAAPAAAKPGFLGRLFGGLKSLFAGEEQPAVEETKPAETPKAE
SNGENRRQDRRGQRRQGTGRKERGERGDRPERGERKERGEGRDNRERDNREPRENREGRE
SRESRDEQRRNRRNQQQNAPVAEETASEDSAKAPREDQQQRREQRAERQRRRQEEKRQAQ
QEVKALESVEAVESTDEEQEERQQQNMQRRQRRPLSQKVRILSAEEELQRAAEELLAPKA
PVAKAEVAQPTADDSVKLLPETVAAQPEDDAQGENRGNGEGMPRRSRRSPRHLRVSGQRR
RRYRDERYPLQSPMPLAGAFASPEMASGKVWVSYPVAQVEEAEVQAEAVEVEQAAAPVVA
AAVEQHSVAVEETQAAASVNEPAPEAAVETAAVTVTEEAAAVAPVVATPAEETPTLVEAA
PAPAAVEEPKAEETAPAVEAEPVAETVAAEPVVEAKPVEDEPVVDAAPAEAAQAEETPVA
EAAPAPAAVEAAPVEKAPAPIAAEPAPVVAQQPAPVKAVQDVLYKHIATAPMTKAPAPAY
VPEERKHSDWQRPSFNFEGKGSAGGHSAVSQATAPATKPQPVNE
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgccctcgtagat
ggacagcggctgtatgatttggatatcgaaagtccgggtcatgagcagaaaaaagcgaat
atttacaaaggcaaaatcacccgcattgaaccaagtcttgaagcagcgttcgtggactac
ggcgcagaacgacatggtttcctccctcttaaagaaatcgcccgcgaatacttccctagc
aattactcttcccatggccgcccgaacatcaaagatgtgctgcgcgaaggccaggaagtc
atcgttcaggtagacaaagaagaacgtggcaacaaaggcgccgccttgaccaccttcatc
agtctcgcgggcagttatctggtgctgatgccgaacaacccgcgcgccggcggtatttcc
cgccgcatcgagggtgacgatcgcaccgagctgaaagaagcgctctcctcgctgcaactg
ccggacggcatgggcctgatcgttcgcaccgcgggcgtaggcaaatccgccgacgcactg
cagtgggatctctccttccgcctgaagcactgggaagcgattaaaaaagccgccgaaggc
cgccccgcgccgttcctgatccaccaggaaagcaacgttatcgtgcgcgccttccgcgat
tacctgcgcccggacatcggcgaaatcctgatcgacaacccgaaaattctcgatctggcc
aaagagcacatcgctgcgctgggccgcccggatttcagcagcaaaatcaaactgtacagc
ggtgaaatccctctgttcagccactaccagatcgaatcgcagatcgaatccgccttccag
cgtgaagtgcgcctgccgtccggcggctcgatcgtcatcgacagcaccgaagcgctgacc
gccatcgacatcaactccgcccgcgccacccgcggcggcgacatcgaagagacggcgttc
aacaccaacctggaagcggcggacgagatcgctcgccagctgcgcctgcgtgaccttggc
ggcctgatcgtcatcgacttcatcgacatgacgccggttcgccaccagcgcgaagtggaa
aaccgcctgcgcgatgccgtgcgccaagaccgcgcgcgcatccagatcggccgcatttcc
cgtttcggcctgctggaaatgtcccgtcagcgcctcagcccgtcgctgggcgaatccagc
caccacgtgtgcccacgctgtaacggcaccggcaccattcgcgacaacgaatcgctggcg
ctgtccatcctgcgcctgatcgaagaagaagcgctgaaggaaaacaccaaagaagttcac
gctatcgtgccggttcaggttgcttcgtacctgctgaacgaaaagcgcgaatccgtcagc
gcgatcgaaaaacgtcagggtggcgtgaaagccgtcatcgtgcctaacgatgaaatgcaa
accccgcactactcggtgctgcgcgtgcgcaagggcgaggaaacctctaccctcagctac
ctgctgccgaagctgcatgaagaagacatggagcgcccgctggaagacgcgccgatggaa
cgcaagcgtccggagcaaccggccctggcttccttctccctgtccgccgatgcgccaccg
ccggctgaagaacctgtcgccgtggccaagcctgccgccgccaaagctaaagccgcagcg
ccggccgccgccaagccgggcttcctgggccgcctgttcggtggtctgaagagcctgttc
gccggtgaggaacaacctgccgtcgaagaaaccaaaccggccgaaacgccgaaggcggaa
agcaacggtgaaaaccgtcgtcaggatcgtcgcggtcagcgtcgccaaggcaccggccgt
aaagagcgcggtgagcgtggcgaccgtccggaacgcggcgagcgtaaagagcgcggtgaa
ggccgtgacaatcgcgagcgcgacaaccgtgagccgcgtgagaaccgcgaaggccgtgaa
tcgcgtgaatcccgcgatgaacagcgccgtaaccgccgcaaccagcagcagaacgcgccg
gtagcggaggaaaccgcctcggaagacagcgctaaagcgccgcgcgaagatcagcagcaa
cgccgtgagcagcgtgctgaacgccagcgtcgtcgtcaggaagaaaaacgtcaggcgcag
caggaagtgaaagcgctggaaagcgttgaagcggtcgagagcaccgacgaagagcaggaa
gaacgccagcagcagaacatgcagcgccgccagcgccgccctctgtcgcagaaagtgcgt
atcctgtctgcggaagaagaactgcagcgtgcagcggaagagttgttggcgccgaaagcg
ccggtagcgaaagccgaagtcgcgcagccgaccgccgacgacagcgtcaagctgctgccg
gaaaccgttgccgctcagccggaagacgatgcccagggcgaaaaccgtggcaacggcgaa
ggcatgccgcgccgttcccgtcgttcaccgcgtcacctgcgcgtcagcggccagcgtcgc
cgtcgttaccgcgatgagcgttacccgctgcagtccccaatgccgctggcgggcgcgttc
gcttcgccggaaatggcatcgggcaaagtctgggtaagctacccggttgctcaggttgaa
gaagccgaagtgcaggccgaagccgtagaagtagaacaggcagcggcaccggttgtcgcc
gcagcggttgaacagcacagcgttgccgtggaagaaactcaggctgcggccagcgtcaac
gagccggcaccagaagccgccgttgaaactgcggccgttaccgtaacggaagaagctgca
gccgtagcgcctgtcgttgccaccccggccgaggaaaccccgacgctggtggaagccgcg
ccggcacctgccgcagttgaagaaccgaaagcggaagagactgccccggcagtggaagcc
gagccggtagctgaaaccgttgcggcagaacctgtggttgaagccaagccggtggaagac
gagcctgtggtcgacgctgcgccggcagaagctgcgcaagcggaagaaacgccagtggca
gaagcagcgcctgcgccagccgccgtggaagccgctccggtcgaaaaagccccggcgcca
atcgccgcagaacctgcgcctgtggttgctcagcagccggcaccggtgaaagccgtgcag
gacgtactgtacaaacacatcgccactgcaccgatgaccaaagcgcctgcgccggcctac
gtgccggaagaacgcaagcacagcgactggcagcgcccttccttcaactttgaaggcaaa
ggctcggcaggcggccattcggcggtgagccaggccaccgcgccggccaccaagccgcag
ccggttaacgaataa
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