Serratia marcescens SM39: SM39_2025
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Entry
SM39_2025 CDS
T03592
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
smar
Serratia marcescens SM39
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smar03019
]
SM39_2025 (hrpA)
Enzymes [BR:
smar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SM39_2025 (hrpA)
Messenger RNA biogenesis [BR:
smar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SM39_2025 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
NACHT
nSTAND3
T2SSE
PhoH
AAA_16
SLFN-g3_helicase
AAA_23
AAA_25
HALZ
Motif
Other DBs
NCBI-ProteinID:
BAO34047
UniProt:
A0AAT9EMV2
LinkDB
All DBs
Position
complement(2080264..2084151)
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLEALPAQLGELMLRDQQRLRRRLQGARKIKNPDAQLAVAAEVESDITAARQKVQAR
AASCPRITYPESLPVSQKKQDILNAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGL
IGHTQPRRLAARTVANRIADELETPLGGSVGYKVRFNDQVGENTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVEVRYRPVVDDGDDTDRDQLQAIFDAVDELGREGPGDILIFMSGEREIR
DTADALNRLNLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGVCIRLYSEQDFLSRPAFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIATADNGHYQ
LTPQGRQLAQLPIDPRLARMVLEAQKSGSVREVMIITAALSIQDPRERPMDKQQASDEKH
RRFADKDSDFLAFVNLWDYLQEQQKANSSSQFRRLCRNDFLNYLRVREWQDIYTQLRQMV
KELGLPINSTPSDYRSVHTALLTGLLSHIGQKDADKQEYTGARNARFSIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLVKHSYSEPHWSKSQGAVMASEKVTLF
GLPIVAARQVNYGSIDPLLCRELFIRHALVEGDWQTRHAFFRDNQKLRAEVEELEHKSRR
RDILVDDETLFGFYDRRLPNDVVSGRHFDSWWKSAAKQQPDLLNFEKEMLIKDGANKISA
LDYPNFWHQGNLKLRLSYQFEPGTDADGVTVHIPLPILNQVEEQGFEWQIPGIRRELVIA
LIKSLPKPVRRNFVPAPNYAEAFLGRVTALELPLLDALERELRRMTGVTVSRDDWQWDQV
PDHLKMTFRVVGEKNQTLREGKDLAALRLQLKEKVQETLSAVADDGLEQSNLHVWSFGQL
PAFYEQKRGGYSMKAYPALVDEKDSVAIRLFDSESEQQQAMWQGTRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLELIDDCISCGIDKLIAEHGGPVWQEEGFARLQEQIRAEL
NDTVVEVARQVEQILTAVFNINKRLKGRVDMSLALALSDIKTQLGGLVYRGFVTGNGWKR
LPDTLRYLQAIERRLEKLAIDPHRDRAQMLRVEQVQQAWQQWLNKLPPKRQQEEEVKAVR
WMIEELRVSLFAQQLGTPYPISDKRILQTIEQLSG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatctccgctcgaggcactgccggcccaactgggtgagctgatgctccgcgatcaa
caacgcctgcgtcgtcgcctgcagggcgcacgaaaaatcaaaaatcccgatgcccagctg
gcggtggccgccgaagtagaaagcgacatcacggcggcgcggcaaaaagtgcaggcgcgc
gccgcgtcttgcccgcgcattacctatccggaaagcctgccggtcagccaaaaaaagcag
gacatattaaacgccatccgcgatcaccaggtggtgattgtcgccggggaaaccggctcg
gggaaaaccacccagctgccgaagatctgtctggaactggggcgcggggtgaaagggctg
atcggccatacccagccgcgccgcctggcggcgcgcaccgtcgccaaccgcatcgccgac
gagctggaaaccccgctcggcggcagcgtcggctacaaggtgcgcttcaacgatcaggtg
ggagaaaataccctggtcaagctgatgaccgacggcatcttgctggcggaaattcagcag
gaccgcctgctgatgcagtacgacacgctgatcatcgatgaagcgcacgagcgcagcctc
aacatcgactttattctcggctacctgcgtgaattgttgccgaagcgcccggatctgaag
gtgatcatcacctcggcgaccatcgatccgcagcgcttctcgcgccatttcaacaatgcg
ccaatcatcgaggtttccggccgcacctacccggtggaggtgcgctaccgcccggtggtc
gacgacggcgacgataccgatcgcgaccagctgcaggcgattttcgatgcggtggacgag
cttggccgcgaagggccgggcgacattctgatcttcatgagcggcgagcgcgagatccgc
gataccgccgacgccctgaaccgcctcaatctgccgcataccgaggtgctgccgctgtat
gcgcgcctgtcgaacagcgagcagaaccgggtgttccagtcgcaccacggccgccgcatc
gtgctggccaccaacgtggcggaaacctcgctgacggttccgggcatcaagtacgtcatc
gatccgggcaccgcgcgcatcagccgctacagcttccgcaccaaggtgcagcgcctgccg
atcgaaccggtgtcgcaggcctccgccaaccagcgtaaagggcgctgcggccgcgtatcg
gaaggggtgtgcatccgtctgtactccgaacaggatttcctgtcgcggccggcgtttacc
gatccggaaattctgcgcaccaacctggcttcggtcattctgcagatgacctcgctgggg
ctgggcgacatcgccgcgtttccgttcgtcgaggcgccggacaagcgcaacattcaggat
ggcgtgcgccttctggaagagctgggggcgatcgccaccgccgacaacggccactatcag
ctgacgccgcagggccgccagctggcgcagttgccgatcgacccgcgtctggctcgcatg
gtgctggaagcgcagaagagcggcagcgtgcgcgaggtgatgatcatcaccgccgcgctg
tcgattcaggatccgcgtgagcgcccgatggacaagcagcaggcctcggatgaaaaacac
cgccgcttcgcggacaaggactccgacttcctggcgttcgtcaacctgtgggattatctg
caggagcagcaaaaggcgaactcctccagccagttccgccggctgtgccgcaacgatttc
ctcaactacctgcgggtgcgcgagtggcaggatatctacacccagctgcgccagatggtg
aaagagctggggctgccgatcaacagcacgccttccgactaccgcagcgtgcacaccgcg
ctgctgaccggcctgctgtcgcacattggccagaaggatgcggacaagcaggaatacacc
ggcgcacgcaacgcccgcttctccatcttccccggctccggcctgttcaagaagccgccg
aagtggactatggtggccgagctggtggaaaccagccgcctgtgggggcgcatcgccgcg
cgcatcgaaccggaatggatcgagccgctggctcagcacctggtgaaacacagctacagc
gaaccgcactggtcgaagtcgcagggggcggtgatggccagcgaaaaggtcacgctgttc
ggcctgccgatcgtcgcggcgcgccaggtcaactacggctccatcgatccgctgctgtgc
cgtgagctgtttattcgccatgcgctggtggagggcgattggcagacgcgccacgccttc
ttccgcgacaaccaaaagctgcgcgccgaagtggaggagctggagcataaatcacgccgc
cgcgacattctggtggatgacgaaacgctgttcggcttctacgatcgccgtctccccaac
gacgtggtttccggccgtcatttcgacagctggtggaagagcgcggccaaacagcagccg
gatctgctgaacttcgaaaaagagatgctgattaaggacggcgccaacaagatcagcgcg
ctcgattacccgaacttttggcatcagggcaacctcaagctgcggctgagctaccagttt
gaaccgggcaccgacgccgacggcgtgacggtgcacattccgctgccgatcctcaaccag
gtggaggagcagggcttcgaatggcagatccccggcattcgccgcgagctggtgattgcg
ctgatcaaatcgttgccgaaaccggtgcgccgcaacttcgtgccggcgccgaactacgcc
gaggcgttccttggccgcgtcactgcgctggaattgccgctgctggacgcgctggagcgc
gagctgcggcgcatgactggcgtgaccgtgtcacgtgatgattggcagtgggatcaggta
cccgatcacctgaagatgaccttccgcgtggtgggcgagaaaaaccagacgctgcgcgaa
ggcaaagacctggccgcgttgcgcctgcagctgaaagagaaggtgcaggagacgttgtcg
gcggtggccgacgatgggctggagcagagcaatctgcatgtctggagctttggccaactg
ccggcgttttacgagcagaagcgcggcggctattcgatgaaggcttacccggcgttggtg
gatgaaaaggacagcgtggcgatccgcctgttcgacagcgaaagcgagcagcaacaggcg
atgtggcagggcacgcgccgcctgctgttgttgaatattccttcgccgatcaaatacctg
catgaaaagctgccgaacaaggccaagctggggctctacttcaacccgtacggcaaggtg
ttggagctgattgacgattgcatttcgtgcggtatcgacaagctgatcgccgaacacggc
ggcccggtctggcaagaggaaggctttgcgcgcctgcaggagcagatccgcgccgagctg
aacgacacggtcgtcgaggtggccaggcaggttgagcagatcctgacggcggtcttcaac
atcaacaaacggctgaaaggccgggtggatatgtcgttggcgctggcgttgtcagacatc
aaaacccagctcggcggcctggtctaccgcggtttcgtcaccggcaacggctggaaacgc
ctgccggacacgctgcgctacctgcaggcgatcgaacgccgattggaaaaactggccatc
gatccgcatcgcgatcgcgcgcagatgctgcgggttgagcaggtgcagcaggcgtggcag
cagtggctgaacaagctgccgccgaagcgacagcaggaggaagaggtgaaagcggtgcgc
tggatgatcgaagagctgcgcgtcagcctgttcgcgcagcagctgggcacgccgtacccg
atctccgacaagcgcattctgcaaactatcgagcagctttcgggctaa
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