Serratia marcescens SM39: SM39_2073
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Entry
SM39_2073 CDS
T03592
Symbol
rnb
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
smar
Serratia marcescens SM39
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smar03016
]
SM39_2073 (rnb)
Enzymes [BR:
smar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SM39_2073 (rnb)
Transfer RNA biogenesis [BR:
smar03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SM39_2073 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
BAO34094
UniProt:
A0AAT9DUL1
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Position
2131276..2133210
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRI
IATLHTEKEREIAEPESLVEPFLSRFVGRVQKRDDRLSIVPDHPLLKEAIPCRPVRELTH
NFQAGDWAVAEMRRHPLKGDRGFNADLTQFITNGEDHFAPWWVTLARHNLEKEAPEMLAL
SEPAAASAREDLTSLEFVTIDSASTEDMDDALYVTDNGDGSLQLTIAIADPTAYVEQGSK
LDDIARVRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRQVLACRVTIAADGALGEDIQF
FAAEIESKAKLVYDEVSDWLEGIAGWQPPSDAIAQQVALLKRVCDARNAWRHQHALVFKD
RPDYRFVLGEKGDVLEIVTEQRRSANRIVEECMIAANVCAAIVLRDRLGFGVYNVHTGFD
PALVEQAVTVLQANGVEAEADKLLTLDGFCELRRHLDAQPTQFLDSRIRRFQTFAEISTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIINQQPAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARFLQDKAGTDTRFNAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHAVRDE
MQCSQETGTVQIKGEVVYRQSDTLQVTIAEVRMETRSVIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcactctcaaaccccg
cgcgttgaaggcgtcgtgaaagggactgagaaaggctttggctttcttgaagtagacggt
caaaaaagttacttcattccgccgccgtacatgaagaaagtcatgcacggggatcgcatt
atcgccaccctgcacaccgagaaagagcgcgaaatcgccgagccggaatccctggtcgag
ccgttcctgtcgcgctttgtcggccgcgtgcaaaagcgcgacgaccgtctgtccatcgtg
cccgatcatccgttgctgaaagaggcgattccgtgccgcccggtgcgtgaattgacccac
aacttccaggccggcgactgggcggtggcggaaatgcgccgtcatccgctgaaaggcgat
cgcggcttcaacgccgatctgacccagtttatcaccaacggtgaagaccatttcgccccg
tggtgggtgacgctggcgcgtcacaacctggaaaaagaggcgccggagatgctggctctc
agcgagccggccgccgcgtcggcgcgtgaagatctgacctcgctcgaattcgtcaccatc
gacagcgccagcaccgaagacatggacgatgcgctgtacgtgaccgacaacggcgacggt
tcgctgcagttgaccatcgccatcgccgatccgaccgcctacgtcgaacaaggcagcaag
ctggacgatatcgcccgcgtgcgcgcattcaccaactacctgcctggcttcaacatcccg
atgttgccgcgcgatctgtcggacaacctgtgctcgctgcgccctaacgagcgccgccag
gtgctggcttgccgcgtgaccatcgccgccgacggcgcgctgggcgaagatattcagttc
ttcgccgccgagatcgaatccaaagccaagctggtatacgacgaagtgtccgactggctg
gaaggcattgccggctggcagccgccgagcgacgccatcgcacagcaggtagccctgctg
aaacgcgtttgcgacgcgcgcaacgcctggcgccaccagcatgcgctggtgtttaaagat
cgcccggactaccgcttcgtgctgggtgaaaaaggcgacgtgctggagatcgttaccgag
cagcgccgcagcgctaaccgcatcgttgaagagtgcatgatcgccgccaacgtctgcgcc
gccatcgtgctgcgcgatcgcctgggcttcggcgtgtacaacgtgcacaccggtttcgat
cctgcgctggtcgagcaagcggtcaccgtattgcaggccaacggcgtggaagccgaagcc
gacaagctgctgaccctcgacggtttctgcgaactgcgccgccacctggacgcgcagccg
acccagttcctcgacagccgcatccgccgcttccagaccttcgcggagatcagcaccacg
ccggggccacacttcggtctggggctggaggcttacgccacctggacatcgccgatccgt
aagtacggcgatatggtcaaccatcgcctgctgaaggcgatcatcaaccagcagccggcg
gaaaaaccgcaggatgacgtgacggtacagctggcggagcgccgccgcctcaaccgcatg
gcggagcgcgacgtcggcgactggttgtacgctcgcttcctgcaggacaaggccggtacc
gatacccgcttcaacgccgagatcatcgacgtgacccgcggcggcctgcgcgtgcgcctg
ctggacaacggcgcggttgccttcattccggcgccgtttattcacgcggtgcgcgacgag
atgcagtgcagccaggaaaccggcaccgtgcagatcaagggtgaagtggtttaccgccag
agcgacaccttgcaggtcaccatcgccgaagtgcgcatggaaacccgcagcgtgatcgcc
cgccctgcggcctga
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