Serratia marcescens SM39: SM39_2106
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Entry
SM39_2106 CDS
T03592
Symbol
topA
Name
(GenBank) DNA topoisomerase I, omega subunit
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
smar
Serratia marcescens SM39
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smar03032
]
SM39_2106 (topA)
03400 DNA repair and recombination proteins [BR:
smar03400
]
SM39_2106 (topA)
Enzymes [BR:
smar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SM39_2106 (topA)
DNA replication proteins [BR:
smar03032
]
Prokaryotic type
DNA Topoisomerases
SM39_2106 (topA)
DNA repair and recombination proteins [BR:
smar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SM39_2106 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BAO34127
UniProt:
A0AAT9F114
LinkDB
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Position
complement(2178372..2180969)
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AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSASKKSADSTEDKAKKKVK
KDEKAALVNRMGVDPYHGWKAHYEILPGKEKVVAELKSLAENADHIYLATDLDREGEAIA
WHLREVIGGDDKRFSRVVFNEITKNAIQQAFKQPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVERERDIKAFVPEEYWELHADLLAKGETALQMEVTH
AHDKPFKPVNREQTHAAVKLLEKARYTVLDREDKPTSSKPGAPFITSTLQQAASTRLSFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDALNMVRGYIGENFGDKYLPKAPNQYSSKEN
SQEAHEAIRPSDVNVLAEQLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVKAGDY
QLRAKGRTLRFDGWTKVMPALRKGDEDRTLPYVEIGSELDLQKLIPSQHFTKPPARYSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVESRRFYAEKMGEIVTDRLEENFRELMNY
DFTARMEDGLDEVANNQAEWKAVLDEFFVDFSEQLETAEKDPEEGGMRPNQMVMTSIDCP
TCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPEAEVLNILEGDEAETNALRARR
RCKKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEEGEFRLKGYDGPVVECDKCGSEMHL
KMGRFGKYMGCTNENCKNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELARFKDRLPEKLRYLADAPVADAEGNKTLVRFSRKTKQQYV
SSEKDGKATGWSAFYVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgtaatagttgagtccccggcaaaagccaaaactattaataaatat
ttaggaagtgactacgtggtgaagtccagcgtcggtcatatccgtgatttgccgaccagt
ggctcagccagcaaaaagagcgctgactcaaccgaagacaaagccaagaaaaaagttaaa
aaagatgagaaggcggcgctggtaaatcgcatgggcgtcgacccttaccacggctggaaa
gcgcattatgaaatcctgccgggtaaagaaaaagtggtcgccgagttaaaatcgttggcg
gaaaacgccgaccacatttatctcgcaaccgaccttgaccgcgaaggggaagccatcgcc
tggcacctgcgggaagtgatcggtggggatgacaaacgctttagccgcgtggtgtttaac
gaaatcaccaaaaacgcgatccagcaggcgttcaaacagccgggcgagctgaacattgac
cgcgtcaacgcgcagcaggcgcgccggtttatggaccgcgtggtgggctatatggtctcg
ccgctgctgtggaagaaaatcgcccgcggcctgtccgccggccgcgtgcagtcggtggcg
gtgcgcctggtggttgagcgcgagcgcgacatcaaggccttcgtgccggaagagtactgg
gagctgcatgccgatctgctggcgaagggtgaaaccgcgctgcagatggaagtgacccac
gcgcacgacaagccgttcaaaccggtcaaccgcgagcagactcacgccgcggtcaagctg
ctggaaaaagcccgctacacggtgctcgatcgcgaagacaaaccgaccagcagcaaaccg
ggcgcgcctttcattacctccacgctgcagcaggccgccagtacccgcctgagcttcggc
gtgaaaaaaaccatgatgatggcgcaacggctgtatgaagccggccacatcacctatatg
cgtaccgattccaccaacctgagccaggatgcgctcaacatggtgcgtggctacatcggc
gaaaacttcggcgacaaatacctgccgaaggcgccgaatcagtacagcagcaaagagaat
tcgcaggaagcgcacgaagcgatccgtccttcggatgtgaacgtgctcgccgagcagttg
aaagacatggaagcggacgcgcagaagctgtatcagctgatctggcgccagttcgttgcc
tgccagatgacgccggcgcaatacgattccaccacgctgacggtgaaagccggcgattat
cagctgcgcgccaagggccgtacgctgcgctttgacggctggaccaaggtgatgccggcg
ctgcgcaagggcgatgaagatcgcaccctgccatacgtcgaaatcggcagcgagctggat
ctgcagaaactgatcccaagccagcacttcaccaagccgccggcgcgctacagcgaagcc
tcgctggtgaaagagctggaaaaacgcggcatcggccgcccgtccacctacgcctccatc
atctcgaccattcaggatcgcggttatgtgcgggtagaaagccgccgcttctatgccgag
aaaatgggcgagatcgtcaccgatcgcctggaagaaaacttccgcgagctgatgaactat
gacttcaccgcacgcatggaagatggtctcgatgaggtcgccaacaaccaggccgagtgg
aaagcggtgctggatgagttcttcgtcgacttcagcgaacagctggaaacggcggagaag
gatccggaagaaggcggcatgcggcctaaccagatggtgatgaccagcatcgactgcccg
acctgcggccgcaagatgggcatccgtactgccagcaccggcgtgttcctcggctgttcc
ggctacgcgctgccgccgaaggagcgctgcaaaaccaccatcaacctggtgccggaagcg
gaagtgctcaacatcctcgaaggcgacgaggcggaaaccaacgcgctgcgcgcccgccgc
cgctgcaagaaatgcggtacggcgatggacagctatctgatcgacaaccagcgcaagctg
cacgtctgcggtaacaacccggcgtgcgacggttacgagatcgaagagggcgagttccgt
ctgaaaggctacgacggcccggtggtggagtgcgacaagtgcggctcggaaatgcacctg
aaaatggggcgtttcggcaagtacatgggctgcaccaacgagaactgcaaaaacacccgc
aagatcctgcgtaacggcgacgtcgcgccgccgaaggaagatccggtgccgttgccggag
ctgccgtgcgagaagtcggacgcctatttcgtgctgcgtgacggcgctgccggcgtgttc
ctggcggccaacaccttccctaaatcgcgcgagacccgcgcgccgctggtggaagagctg
gctcgcttcaaggatcgcctgccggagaagctgcgctatctggccgatgcgccggtggcg
gacgccgaaggcaataaaacgctggtgcgtttcagccgcaaaaccaaacagcagtacgtc
tcttctgaaaaagacggcaaggcgaccggttggtccgcgttctacgtggacggcaagtgg
gtcgaaggtaagaagtaa
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