Serratia marcescens SM39: SM39_2231
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Entry
SM39_2231 CDS
T03592
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
smar
Serratia marcescens SM39
Brite
KEGG Orthology (KO) [BR:
smar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smar03016
]
SM39_2231 (rnd)
Enzymes [BR:
smar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SM39_2231 (rnd)
Transfer RNA biogenesis [BR:
smar03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SM39_2231 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
BAO34248
UniProt:
A0AAT9ETC8
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All DBs
Position
complement(2297171..2298292)
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AA seq
373 aa
AA seq
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MNYQLITTDAGLQQVCEQARKHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPI
KQWQPFVDLLADTAVVKFLHAGSEDLEVFLNAFKTLPTPMVDTQILAAFTGRPLSCGFAT
LVAEYMKVELDKSESRTDWLARPLTERQCVYAAADVFYLLPMAKQLVQETEEAGWTAAAN
NECLLLCQRRSEALAPELAYREISNAWQLRPRQLGCLQKLAQWRLRQARERDLAVNFVVR
EENLWQVARYMPSSLGELDSLGLSGPEIRYHGKTLLALVAEAEALDESELPAPLANLIDQ
PGYKKVFKDIKAAIATVSEQSGLSSELLASRRQINQLLNWHWQLKDGESRPELISGWRGD
LLMAPLQDILKDY
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcactaccgatgccggattgcagcaggtctgcgagcaggcgaga
aagcatgcccagattgcgctggacaccgagtttgtcagaacgcgcacctactatccgcag
ctgggcctgatccagctctacgacggtgaacaactctcccttatcgatcctctgccgatc
aagcaatggcagccgtttgtcgacctgctggccgataccgccgtggtgaagttcctgcat
gccggcagtgaagatcttgaagtgtttctcaacgcctttaaaacgctgccgacgccgatg
gtcgatacccagatcctggcggcgtttaccggccggccgctctcctgcggtttcgcgacg
ctggtggcggagtatatgaaagttgagctggacaagagcgagtcgcgcaccgactggctg
gcgcgcccgctgaccgaaaggcagtgcgtgtacgcagccgccgacgtgttctatctgctg
ccgatggccaaacagctggtgcaggagaccgaagaggccggttggaccgcggcggccaac
aatgagtgcctgctgctgtgccagcgccgcagcgaggcgctggcgccggaattggcctat
cgcgaaatcagcaatgcctggcagctgcgcccgcgtcagctcggttgtttgcagaagttg
gcgcaatggcggctgcgccaggcgcgcgagcgcgatctggcggtaaacttcgtggtgcgt
gaggaaaacctgtggcaggtggcgcgctatatgccgtcttcgctgggagaactggattcg
ctgggcctgagcgggccggagatccgttatcacggtaaaacgctgctggcgctggtggcg
gaggccgaagcgctggacgaatccgagctgccggcgccgttggctaacctgatcgatcag
ccgggctacaagaaggtgttcaaagacatcaaggcggcgatcgctaccgtcagcgagcaa
agcgggttgagcagcgagctgctggcatcccgtcgccaaattaaccaattgctgaactgg
cattggcaactgaaagacggcgaaagtcgccctgaattaatcagcggctggcgcggcgat
ctattaatggcaccgctgcaggacatcctgaaagattattaa
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